Protein Info for mRNA_4328 in Rhodosporidium toruloides IFO0880

Name: 12696
Annotation: HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 534 transmembrane" amino acids 54 to 72 (19 residues), see Phobius details amino acids 283 to 296 (14 residues), see Phobius details PF00646: F-box" amino acids 40 to 71 (32 residues), 23.1 bits, see alignment (E = 2.8e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (534 amino acids)

>mRNA_4328 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383 (Rhodosporidium toruloides IFO0880)
MSGDDGLRDVVGKSSVETKVHLPPTPPYTPLLLLTTPRTTLSSLPTEILDLVLSHLPLPS
LAVCALLSRSVLPLARQHLYRLLPLRNQRNGQACPTGGSTLDEPSTALISTLEAHRDTLA
PLAQRLDFDLLSHLPAEEVATILSRIFALCTGVVDVRLGAGSHGHGMGYRCLLRALILHP
PAADRLRVLNIEQCAGAAHTLALVLLKTRELKELRIGQFLLEDEDLEVFCSGQKPECQLE
VFTARQRITPLAFDFCQAASAATLRTADLPICEKTALDLSPFSSLTSVTLFVFLSAAPTP
FSPSHPSFAPTMSRLNRNFASTIASVPYLQRLTLKGLWDCAITAPPGASAAVDLVRHAEL
LEALPHERGGLEKLVVKSELNSIALTRWLANDAWWGAYEVEEAERTSVRGETLAEVPDRT
PSPPSLRGLLGSDIPPSSPPSVASITPFTASPVSSPIAQSPLPSRPSTPLETASLPSPPP
HVTSSTVSLRRLQIWQKQTYSAARRLFQANVREKVDEEARRRGVQVEWRMYEKW