Protein Info for mRNA_4329 in Rhodosporidium toruloides IFO0880

Name: 12697
Annotation: KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1157 PF13604: AAA_30" amino acids 598 to 662 (65 residues), 28.5 bits, see alignment 3e-10 PF13086: AAA_11" amino acids 598 to 832 (235 residues), 141.8 bits, see alignment E=9.3e-45 PF13245: AAA_19" amino acids 602 to 829 (228 residues), 44.2 bits, see alignment E=6.4e-15 PF13087: AAA_12" amino acids 841 to 1060 (220 residues), 188.4 bits, see alignment E=2.9e-59

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1157 amino acids)

>mRNA_4329 KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1) (Rhodosporidium toruloides IFO0880)
MAPDSVTRWERNPPPPPVPPRPTHAATSPDIDDFLANLAKTATSSAPHEAVEAGFVDELF
AWLQRKSSAWDDEKVKADGEVDPEILSWHQEQESQKSGQQPSRRKTKSRRGDISPESVAG
LAPQVEPEFVDGRPLARPLPDLIPALLRLPAKRRNHFRLAPAPKLETATQIRPYLPPPPF
HDATPAHPSPQPHHYPLHSRYDWRLSSPIRRFVDSTPPSLYSVKDTSTFAQGHNRLVGVG
IEAANVHNEKEERFKWRERWGFKTHAPREFRSEWPEAEVYRKRFERLIALSKESEELHYL
DKLARLGTPRQRERKGVTIARAIGCWMSNQDDVHQAMSLTADERFRLRRQAANFGAIGTS
ARMVAEFGFEDGSPISDWHKNVFTPGQPVRISAASDEELDAEGPQPPPVVARVAKWHVQG
SLLEIRDNKLVIIFEEFDVWPMDLHDAYQIDIGTETTSIDLQRAALESLFFDPTVQRAHN
HEEVRKGQLAYVVKGEVVRRLNEVTLRGTDLRELIVPKEGDEAYAKHLLLPETVTYAEGA
FEDADGVAITTPEPTVEALPVPSIPSALLRDNQLINSWIMRYSRDDPIEMPGDPQLGLNP
SQTKAIAMALGQRMSLIQGPPGTGKSQTIVSLIALLKLEWRVPHPILLAAPTHVAVDHLV
KSLVKAGLNPLRHGKLPRIDKSCRPWAIEERQEKHPLWPRVEEAKCALDEAKALSEAFEA
EVRKLKDITSAQRRKIEEERLILRENLIKAFRKFVVLEHKLLASLLSTADVVCSTALGSG
YSKALMQLDFPIVLLDEAAMCTEPVSLLPLMKGAQLAALIGDHKQLPAVMPSKEAERERL
HISLFERLFQSGKIPSITLDMQYRMRPSISAFPNKSFYLDALRDAETVLDRHSPPKSRFL
LTNPLPDGDLADVGQRYDSVAFISHNGRETKHRTSWLNRDEVEILVDIVGDLLLENPDLD
ASDIGIITPYYSHTRLVRNTFNEPSATARLRTLLGPVRAATVSQVEVNTVDAYQGREKRV
VIFSTVRSNSNGSIGFLTNKRRLNVALTRARDALIVVGNRRTLERAAALSSYQKQRESED
PDLDFGVWKRFIEWCDERGLSKSWAEMNGDVDLQMKAEAEAQARAKRRAEAHASAKWPSS
APTLPLDEDVEAFLFDC