Protein Info for mRNA_4332 in Rhodosporidium toruloides IFO0880

Name: 12700
Annotation: K02912 RP-L32e, RPL32 large subunit ribosomal protein L32e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 PF01655: Ribosomal_L32e" amino acids 13 to 120 (108 residues), 159.4 bits, see alignment E=1.8e-51

Best Hits

Swiss-Prot: 66% identical to RL32A_SCHPO: 60S ribosomal protein L32-A (rpl3202) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02912, large subunit ribosomal protein L32e (inferred from 75% identity to ppl:POSPLDRAFT_134710)

Predicted SEED Role

"LSU ribosomal protein L32e" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (130 amino acids)

>mRNA_4332 K02912 RP-L32e, RPL32 large subunit ribosomal protein L32e (Rhodosporidium toruloides IFO0880)
MAAASIKIVKKRTKPFKRHQSDRYAGVKEAWRKPKGIDNRVRRRFKGQLPMPSIGYGSNK
KTRHLLPNGKKEFVVHNEKDVETLLMQGKQFAATIASSVSARKRVAIVEKARVLGVKVNN
SNARVRTEEA