Protein Info for mRNA_4342 in Rhodosporidium toruloides IFO0880

Name: 12710
Annotation: K08801 PASK PAS domain containing serine/threonine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1108 PF00069: Pkinase" amino acids 849 to 1083 (235 residues), 145 bits, see alignment E=2.9e-46 PF07714: Pkinase_Tyr" amino acids 891 to 1077 (187 residues), 60.7 bits, see alignment E=1.4e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1108 amino acids)

>mRNA_4342 K08801 PASK PAS domain containing serine/threonine kinase (Rhodosporidium toruloides IFO0880)
MTHCMANKLTLRLRTRADEVFPLIRNSTSSRSPSRLSAACLGLQSESLVANMSPPPPPPP
TEPPRRPSFAPLSRQHSRSSSQIATLASLALSPVTPTTPLPFSSGSRDRARERRSTGGST
ASAERRRGEAIESSEDGSDADERSADGRGRVGAASDGPAGGMSRSTSSKSIKDRRSTFPS
AIAALNVLPTVESDPASPAASSSPATSVHQTTSRPSSGTSSPITSLPPTDPATPAQSSFP
STSTSLAQFIQQKRRQASAPYFASARSQSLFSPGAGFSLGPSSTNAGAGPSGYSGSWGSG
TGGTRAAGEIEAGASQISPRLASASLPPSRNRSRASSRRATATGGVLSLQTFGLSAPFSE
AHSLEDSGLVPTPTTEEWRVLGSELSELASMRAREEKERKEREGEKGEAGAVEPEEGQRK
PRWKRWPSLQDDASSDDEEDNFALSLSLSKYGKYKHGHQLPHTPPGRSRSSSPSNKTKDD
SHPSRPAPSTYKSSFSYTSTGSGVTGGFTSHSNTNSISSITSTHPVRSPLTDPLPSIDTF
EPTHRKGQKSDPSLALSHVTAESTPTHQRPALSRGSLSSATGSLSSTSPPRSLDSSTNGT
ATPASTEDSDRTVELAQPRPTKPHGLPGLPLPPRVFRSLEEGDSGSRDTGLATPPSVAAT
PFDGDPFASTAPASASLPPTPYIPPPSDDDSQDAAGRSGAAVDLDWTKPLGPVDPRTYSA
VTGTRDIRSFVCDEEEAGKGAYGSVRRAREKGKDGKPVGPELIIKYVIKQRILADCWKKH
KILGPIPIEVHVLDHLRRVPYEPRPRLNFLSKRRGRNGTIAKKGTPVRRDSAPKLDLWTG
GKDGGIVQTGHPNICPLLDYWEDSEFYFLVMPQATASPTSDPDSHPRHGQDLFDYVDAHP
DGLPPRDIHRILSQVADAVWFLHEHQIVHRDIKDENVTLDADGNVRLIDFGSAAYVKEGR
KFDTFSGTLDFAAPEVLKGARYGGKEQDIWALGVLGYVLICGECPFWSPDEAMQGISTDT
RAYAAMQAKISSSTSSSASSSSSTSDEPPTFSIADAVDLVMRCLEIDPANRPSADIICDH
TFLVGQKEGWRGSRGWENPRDEAEEAED