Protein Info for mRNA_4348 in Rhodosporidium toruloides IFO0880

Name: 12716
Annotation: KOG2265 Nuclear distribution protein NUDC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 PF04969: CS" amino acids 38 to 112 (75 residues), 71.4 bits, see alignment E=5.2e-24

Best Hits

Swiss-Prot: 50% identical to NUDC_EMENI: Nuclear movement protein nudC (nudC) from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)

KEGG orthology group: None (inferred from 60% identity to cci:CC1G_10547)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (196 amino acids)

>mRNA_4348 KOG2265 Nuclear distribution protein NUDC (Rhodosporidium toruloides IFO0880)
MSSPPPPTDDAPQLSEAEQKKLDAEQAEREKREQEALPYKWRQTLTDLTITLPVPPGTRG
KQVDVQIKKNHVRVGLKGQEPVLEGELFREVKVDESTWTLDDSSELTLSLEKLSHQSWWP
HVVTSAPKIDTTKIQPENSRLSELDGETRAMVEKMMFDNQQKQMGKPTSDELRKQEMLRN
FQEQHPEMDFSKAKIG