Protein Info for mRNA_4364 in Rhodosporidium toruloides IFO0880
Name: 12732
Annotation: SUPERFAMILY--SSF48371
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2084 amino acids)
>mRNA_4364 SUPERFAMILY--SSF48371 (Rhodosporidium toruloides IFO0880) MPAPADEPSLAVEDIQFEPAQLEASAAAGRGEIWLLSWLSKCEKSVKVLPEATLFAEQAN LTKALVALVMPPSPTSTASTVKPGRPARALVARILILVFSRGDSKGLFDVAQSLLRGMNG SEAKGAPEREKEWRIASAYVLGELYAVFGSQIMSLYIELIQATTRIFRTTSAPVIVRFSA LVCLRKVIVVAAKSMSDQTVKDVMKTLKAGLSEKAGAIVRGSADCLLAMSAAVGTYSTLA DLNEVLLPSFRALESADFTTRRSLSRLMAGILAATQVEGSAAPAPAPKKKKAAGKEEEEE DDGYPDIGAPSTSDASSKTLLSPIEMLVQLSGPYNRSTSSRRLRNAIIDVYAELFKTLGS AWVEHHYADIVKHAIDELGCGMAAGLGWVGWNARAAERIDLNKARYEAVAARKAVGILLG DVVSAQLLSEAGQISALREVGTLYLKKWPSLMPNQPGPSKQALLLALEETTSLLRSLGCA PPAVQDVLYDPLVRLVSHPSHSVQITAAWTLRTFCNAAPNRLSGTIVQLLELLNKDLSII SSDGPNKSATVHRRAIGHAHGLAALVNLIPHKPLYVSFDLSAKCMSLAIQLLKQSGNHEL HVSGVEIQVAWILVGSLMSLGPNFVRLHLPQLLILWRNALPKVTSKDASAAQVRGDNEWA FLLHIRECTLGAILSFLRHNGPSATAPGLVNEDVARRLVMLLSNGLAFSSSFATAHPNLS AEHQPSTSSRLQLVDRDIMFRRRLLQCFVAFGQSPATQQYQIPLLQQAVQLISDTDRYFG ESVLQAVANSATFTSIWDETDGYGYGVTSLVRDDRNAVAGGGDQTGAPNSANNKLAKLNR DAAAAKLDEQLRKAVLEAGEHDPLVLWSRLATEKAAFEPLPEAPPPAVGVIDASLELFSL YFTLQEPANQSALLQILHNNLRSFKLEKNPGRKQAILVNSVTAVLGALRLARRAIDAHQV ASPMRDLIKEALLHSDPSLRQAAAESLGRLSSLGGTSFMAGQIQFCVQQVVSNTDPDNRA GCALAFSEIYSHVGSLAAAPVLKTVVDVLLSLSADPHPLVHYHALQSLSNVIDAASLSYA PFTNITLGVLCKLYMQDTHEPEGGTPGSVNLRGDLPAYQAMCRVTDALIGVLGPELQDSE RVRELVLILLKEFTMEKDDGIAVEAIKATQHFLIFAPNALDHAMLVSNLRSQLSSTKQPL KVAAVNSVYQLVQRDAALMSKLGGDGLVRELFALLDDDPTVEGVRDAIISWLRQTADANP SGWIDLCQRIMSRSADLASKKDDKPAAEAAPIFGALADEEAQGLGVEADTGVRPGAPTAR ATSRWRTQLFALQCLHEVFATVLKSGRREHFDVARARVLRANKRGLLITRVADLIKMAFT ASTAQVMEIRLEGLVVLKDVIDNFAASQDVDFDDALLLEQYQAPIAAALTPAFAADSYPE VLASAIQVCAVFVGSGVVKEIEKMGRILKLLTSALESCKDSDMTSLGDVKDLSTTAAVML KTSIFAAWAQFQTSSVNQPYLAEVIRPHLPLLCPFWVASLREYARVRTDPVAASSDAGAG GAAFDSVYSGLSRETALPFYERSWPQMLHAVATLLKASNPHMLRAIDGLEDKSDNLPSPH RSDPAVFFWTVFGLSFEALCTAPSPANSAGTSIQTIALEALGGLLRPDVAGTVLNDEGLF DEVCNLCLRLALTEAAEVKARVLDITVGLVQLFVRDLPAAGAVNGSDVNDKAARGDRRLT QCLRIAVAVLRESVPATSASLKPTAATAASLATHIRLVFSRFADVADLLPAQLRIELYAI AFHFYSVLLKDEKTEIDFAGPTLPVLKTLCDRAATRSDESQTLSKVLNGVLSACLLNIDA VRVRKSTIAIRKLRNNLLAVTLLLTALPPSVQVGSEVVEHACFLVSEIALDTASESSGVA LNCVASLLLAASRAPQSGILAFSASQFVPTVIELVALTSRKGSEVDEARVKAVDEVLKAF VAVLAAVAPERRTQSLSVILPSLVLVLSTSRPPPPMHTVALNHLLTLASSLSLHFKEATA VLSEHERKLLEGSIRAAVGGKGRGGAAVAKGQEEAPRIELRMFG