Protein Info for mRNA_4384 in Rhodosporidium toruloides IFO0880

Name: 12752
Annotation: K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 710 PF14749: Acyl-CoA_ox_N" amino acids 22 to 135 (114 residues), 74.7 bits, see alignment E=1.5e-24 PF02770: Acyl-CoA_dh_M" amino acids 137 to 249 (113 residues), 38.4 bits, see alignment E=1.8e-13 PF01756: ACOX" amino acids 507 to 696 (190 residues), 95.7 bits, see alignment E=4e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (710 amino acids)

>mRNA_4384 K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase (Rhodosporidium toruloides IFO0880)
MAPQSTLDIQAARQRASFDPDVLHRVLLAGSKDPDMRKRVAQLISASPAFDKTSKAYLSR
PKQIERGLKAARDLFQAVDEHDLDYIEYLEALVSLIDDPIGLNLHEIAFTPVIQAQGSDE
QQAEWLPLCYNHAIIGCYLQTELGHGSNVQQLETTATYDTKKDEFVIHSPTISATKWWIG
ALGILSTHGVVQARLFIGGKDYGPHLFIVQLRSMKDHSLLPGIEAGEIGPKVHGAMSALD
NGWARFNNVRIPRKQMLSRFAQVEPSNGGTYVKPPHSKLSYGGMIFIRSQMIGNLSWRLA
KAVTISVRYLHMRRQFADPELKPGEEQHGVEKQVISYPAVYMRVIPQLVNTIVFMTAGKD
MANLYHAMSAELAGGNTNLLAETHAVSSGLKTYVSSAVVEGCETVRRAMGGHGFLASTGV
GRIYATELPSATYEGDNYILNLQVARAALKSFKAFVGSASSDPKDALKNLTASSAYLASL
APPPKLPLSAPTAVKDWQSLSLLQRLLDLRAALTVGRLASLLASGRKFGEMSWECVQVSE
AVVEAFLAGRMVEAIGKGGLLTDGAGEREKAVLEKVVTFFLLHRVSHALPSLLEFGILAP
SPPLSLSSSTPLKQDAPLEQLRLSLDSVARELLPELVGLTDAFGFSDWELDTTVGNHDGA
AYERMLEKAKADEEQNIGSKAEQQRMYREYIRPILERGRKLTGGGGDAKL