Protein Info for mRNA_4390 in Rhodosporidium toruloides IFO0880

Name: 12758
Annotation: K16261 YAT yeast amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 563 transmembrane" amino acids 69 to 88 (20 residues), see Phobius details amino acids 95 to 119 (25 residues), see Phobius details amino acids 144 to 169 (26 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 206 to 226 (21 residues), see Phobius details amino acids 255 to 277 (23 residues), see Phobius details amino acids 297 to 316 (20 residues), see Phobius details amino acids 346 to 368 (23 residues), see Phobius details amino acids 395 to 414 (20 residues), see Phobius details amino acids 425 to 446 (22 residues), see Phobius details amino acids 472 to 492 (21 residues), see Phobius details amino acids 503 to 522 (20 residues), see Phobius details PF00324: AA_permease" amino acids 66 to 525 (460 residues), 365.1 bits, see alignment E=5.2e-113 PF13520: AA_permease_2" amino acids 76 to 507 (432 residues), 128.1 bits, see alignment E=4.2e-41

Best Hits

Swiss-Prot: 40% identical to PUTX_EMENI: Proline-specific permease (prnB) from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)

KEGG orthology group: None (inferred from 70% identity to nfi:NFIA_040600)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (563 amino acids)

>mRNA_4390 K16261 YAT yeast amino acid transporter (Rhodosporidium toruloides IFO0880)
MSPSSPVIDHTPSIPPAPAAFPGDHKSDIEKASPDGSVLHGAAVDGVINPEKGGHADLSR
KLSRYHISMIGWSGGIGTGLFIGAGAAYAKSGPAGLLLAYTIVGSVLWAVMQSIAELATL
IPTAGSFPHWATRFIDPSVGFSLALSYGYCYTIAIASEVSAAAIIVSYWSDISPALVISI
GLAIILVINLLPVRFFGEAEVITGTVKIVCFLGIILASLVITLGGAPNHDRIGFRYWNEP
GPWTNYNGITGSTGHFLGMLAALVNASFSFVGVETVCVASSEAENPHRSIPKAATRVTWR
IGFFYILGSILMGMVIDPRNPGLVSGAGNANASPWTLAMKEAGINALPSIVNACILISAW
SAGNSYCWTGARMIVAMTTDKQLPAIFGRVNKYGVPYYAVLASFAFGPLAYLSLGSGGAS
QAFAWLQNLSTVAGLIAWGTLCFAYIRFHRGCKVQGVDRSTFPWSGPFQPFTAWYGFVGS
VIITLVSGFSVFLKGNWNANDFIASYIGIPIFIIPILLWKLFKGTRFVRARDMDLWSGRL
DSSKLPVPREPRNAWESFVNWLF