Protein Info for mRNA_4406 in Rhodosporidium toruloides IFO0880

Name: 12774
Annotation: KOG2100 Dipeptidyl aminopeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 654 PF00326: Peptidase_S9" amino acids 455 to 649 (195 residues), 139.3 bits, see alignment E=3.8e-44 PF02129: Peptidase_S15" amino acids 460 to 535 (76 residues), 24.1 bits, see alignment E=7.8e-09 PF01738: DLH" amino acids 502 to 643 (142 residues), 44.9 bits, see alignment E=3.1e-15

Best Hits

Predicted SEED Role

"prolyl oligopeptidase family protein" in subsystem Synechocystis experimental

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (654 amino acids)

>mRNA_4406 KOG2100 Dipeptidyl aminopeptidase (Rhodosporidium toruloides IFO0880)
MAGKTTAQYGAWKSPISTDLVLASAVSLGEPKVSPTRSAVAWLEGRPQEKGRSAIVYQKL
QGGQQEQVLPDAKWNARTRVQEYGGSSWSFESDDSILFSSMEGPAYRVKRSADGKWSEPE
QVTPESFVLRYADFAPHPSPSLSSSLALSILEDHTNDTPATVVTTLVALSTSDRKYYEVA
SGADFYAAPEWSPSGKYICWVQWMHPDMPWEGSELYVARVNNPDKPDAANLVDQSSILKV
AGKPKNGESISQPRWAEGDKDTLVFLSDRTGFYELYKYEPEGDKEVKLLLKEPTGADVGG
PDWVLGQQTHMPLSPTQWVSNASGGKLRIISLADGSSELVDTPYVSVGQVDVVSPTQVAV
LGAPATAPSVISLLDLPKGSGEASEKVLKVSSSASVDSAFISKGEKIEYPTRDGSKAYGL
FYAPSSGTYVAPEGSLPPLVVRCHGGPTASARRGLDWMIAFFTSRGFAYVDVDYGGSTGY
GKEFRERLSGTWGIVDVEDTINCVEWLVQQGKVDKSKVAITGGSAGGFTVLASLCDSKVF
TAGTSSYGVSDLKLLAEDTHKFESNYLFKLLGGTPAEASQITAPLLLLQGTEDKVVPQSQ
AETMLEEVKKNGSTCEMLLFEGEGHGFRGRDARKRAMEAELGWYRKTWGIEADE