Protein Info for mRNA_4425 in Rhodosporidium toruloides IFO0880

Name: 12793
Annotation: KOG3844 Predicted component of NuA3 histone acetyltransferase complex

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 615 transmembrane" amino acids 429 to 449 (21 residues), see Phobius details PF13661: 2OG-FeII_Oxy_4" amino acids 138 to 255 (118 residues), 92 bits, see alignment E=4.8e-30 PF13640: 2OG-FeII_Oxy_3" amino acids 139 to 255 (117 residues), 50.7 bits, see alignment E=4.2e-17 PF10637: Ofd1_CTDD" amino acids 306 to 612 (307 residues), 209.2 bits, see alignment E=1e-65

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (615 amino acids)

>mRNA_4425 KOG3844 Predicted component of NuA3 histone acetyltransferase complex (Rhodosporidium toruloides IFO0880)
MSSPTAAEPAAKRQKLAEQPLPFHSTLLARDNVDRLRTAHAASAPYKHAVVDQLFDEGFL
KRARKEITEQLSFRLKETDIYKINQTGDLSNLSGLPASELAVLPTLLELRDALYSKEFRS
FVQEVTGCGPLSGIKTDMSCAEYSEGCYLLNHDDVIGTRRISFILYLVLDEPAWQPEWGG
ALELYPVLEADEQNPDRPNVPVSKPSVVIPPAFNQFVFFEVQPGHSFHSVEEVVVEGDKK
KGGVGARVSLSGWFHKPIEGEEGYEGSDGFKPKSSLQQLYATTLSAATPYPELLSLPLPT
IPSSAELAYLKPLVNSAYLTPKVVSHLRTQFCESSHLVLADFLAPALASEIETLICARDA
EMEKGRRRVEVGGSITNKVPPHTVGESEADGWTVVGPPHLQRYLSLSPTSTTSTDRLSTL
LRQVHDLFTSPAFAALLASLTSLLPTAYTTAVRRFRPGLDYTLARGESASDESASAKLDV
GLGLMPKLEKEEERERWESGEVGGWDIWLANEEGGDEATYGGGGAKKDENGDGEVGEKQE
EQPSEEQTKEAGAEEEEEDDGPLLALEPEWNRLHLVLRDPGVLAFVKYVSARAPSSRWDV
VGEWEVQGVEEEEEA