Protein Info for mRNA_4444 in Rhodosporidium toruloides IFO0880

Name: 12812
Annotation: K14327 UPF2, RENT2 regulator of nonsense transcripts 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1175 PF02854: MIF4G" amino acids 493 to 663 (171 residues), 60 bits, see alignment E=2.7e-20 amino acids 690 to 891 (202 residues), 111.1 bits, see alignment E=6.2e-36 PF04050: Upf2" amino acids 973 to 1064 (92 residues), 65.6 bits, see alignment 7.9e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1175 amino acids)

>mRNA_4444 K14327 UPF2, RENT2 regulator of nonsense transcripts 2 (Rhodosporidium toruloides IFO0880)
MASAAAGPATDSKDGGKRSLRRVELRTANLAAWERGGPPEGLGKLDTSLKRHTALLVKFR
SSLNTAAAIPGLLKEISQLSLEKYVEEAVGAVVDGLGKCKTAAETAGAVEVRCLRCQERN
LLLTRNAVPQVVSAMHQRFPALFTPPFNSLLLQGLKPGSSTATDRDIQEKENNARIIKQR
GLLRVVGELEAVGVVRKEGGNGATGEVTWAALKDLLTSDKEALALVAPLAIAFAKHLGSI
YLPPADSTTSTTEGEASAHDFPTLTDATQVEDDAIVSRDMKDKFRKLLVAFFDALGKREQ
KLHLELQRQDKRNHEAYIRSGEVFEDREKNYEKAVKSWERGWASVTQLAEVLSLPLPTLP
SLQSTLNASIVTAGSSGAASGEELGPQSLWADEEEKKFYEDLVELRGKVPNALLGVAEEE
KVQEVEVKEEAEAEKAEGDEEKDAARIDDEDAAEEPEDPVAKLETAEPDPSIPSGPAAQL
NAIFARLPEASSKKSIDDIAVEFAFLNSKAARKRLVKTLGSVSRNRQDILPYYSRLVGTL
NPYMPDVGKELVALLEDEFRYLQRKKNADFAETRSKNLRFISELTKFRVTPLHVIFYIYK
VLLDDFSGPNIDNFCTVLEGCGRFLLRSEATSERMRQVVDTFKRKKAAMHLDERQTAMLE
NAYYQCDPPDRPAIPPKERTPMQLYIRHLFYNVLNRNSSDKVLKLLRKLHWEDPAARRFI
VRKLHNAFTKVWKIKYSNVHLFAVLLYDLGRYHPEFSVSVIDDVLENIRVGMEINNFKYN
QQRVATVKYLGELYNYRVLDSRVIFDTLWSLVSFGHPDGRPHPDLPSAIDTPDDYFRIRL
VCTLLDTCGACFDRGALKKKLDNFLVFFQMYALSKGSLPMDVGFMYSDTLEQLRPKLVKY
QTFPEAVLAVDEMMAAVAKEAPVEDDVDEQDGQEGARPGADEEDEEGSETEGESETDTID
ADGAAGDAFEDDEDTHEGRGRDPNAMTQEEEDDFARELAKMMVSSTEARKAERKPVSLDV
GIPLIRKAKTEDEVAMDEAAQDSRERKGMQFTLLTKKGNRQQARPRPSATRLNPLTCFLS
QALSMEIPRESSIAISTVAQREQHKAEQERLKRLVLDYESREEEADKQALKETLARRGIV
LNYGAGASRRLIWLGRADHRRAENRKKGIKFEVVP