Protein Info for mRNA_4445 in Rhodosporidium toruloides IFO0880

Name: 12813
Annotation: K16342 PLA2G4, CPLA2 cytosolic phospholipase A2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 810 transmembrane" amino acids 42 to 62 (21 residues), see Phobius details amino acids 455 to 477 (23 residues), see Phobius details PF01735: PLA2_B" amino acids 223 to 603 (381 residues), 95.1 bits, see alignment E=1.8e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (810 amino acids)

>mRNA_4445 K16342 PLA2G4, CPLA2 cytosolic phospholipase A2 (Rhodosporidium toruloides IFO0880)
MAWRGAQSLYRPPLSTLRPLRGSPRRLLSTPTRLSPSTITPAVQGLFLVAGAAVGAGAGS
YGTRTFWSRSLRCEEGKRSSTPDAKSSRNDDDDSGILDKLKSFSPPSLPSAPSISLPSIS
LPDIGGTLSTWTESLSSLTTTFSKLQDELSHGPNSTYSRIVQEGKDSSIHPELQWDATVR
TGQDLPHTERAFLRNRRDKMRAAFARLMDVPLEEVDVRDLPVVAIAASGGGYRAMLNTAA
SLQAAKETGIWDTLTYASGVSGSCWALNTLYTLGGGQIDWTLRHLRERVKEPFLAPDTFI
NLLDFDDPASRTIISAAILKEASQGGEVSLVDAYGTLVSTRLYVPSEKDDLPPPPRPLTL
RTLKTSSQRDILEDGSSPLPIYTTVRHDLPSPKELEKAEKEVGESASETVKKAQWTWFET
TCYEVGSDKLGAWIPTWALGRLFDGGKSTERVPELGVPVLSGIYASAFCATLFSYFLEIK
PLLVSLPFFGTIDDFVKKNAHKLDSIHPLPPAELPNFLYNLPGSLPSSVPSSIIKEKTLG
FADAGVELNIPYVPLMRRSVDVIIALDASADNHETWFSRAAEYAKQYSEKAQSRFAWPEV
DVKAIFPGAEEGEVKENEKDRDDAATKVDQAKAQEQVTASKTAHEREGVETKNPEPVPTG
SAPQSRELATKGKADEKGVPVEADDKPMPESQGAKEPPLGKCSIWIGSTSQSQAATCRND
NPTVDDVLARDGIALAYIPLSPDETFPNPLEVFSTWKFDYTEEETDKLIRLAKANFTAGE
QQLKTLIKGVWLRKRKQRLEDEAAGREQKA