Protein Info for mRNA_4473 in Rhodosporidium toruloides IFO0880
Name: 12841
Annotation: K19782 DSS1, MSU1 exoribonuclease II, mitochondrial
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1128 amino acids)
>mRNA_4473 K19782 DSS1, MSU1 exoribonuclease II, mitochondrial (Rhodosporidium toruloides IFO0880) MLSSSSRAATRRPTSSIVRVFTSSPSTLSSPSSSQPPKAHEPPERDPHAKMYQRVLRTAI YGTYEHQLREKAARSLPALAKGYVSTSGFKPTTRRDIPAYARRLVKKDARSKPVPLDVEQ VEHSLSKRGRTVAQQDLLPRREGSRRQPGSGDERSAVFGQQVRGFSTSASTSRRRVSEDT IVDHESESADLGGGLWEDAESADGLQHSTQSTFQPGDFIETTRGAQLKNGIFICMSPRSA KVGTILDASGILDIFLEDDVSRAIPNFVDPQVASSLKSYALGLDGVETEELPEGMDRRPF AEERLQMLQKIRGLEIAIDAQYKQLLLNGGSNLYQIVRAKIARDRTEPSIVDPTESINIE KAIRYLGISRPTVATRIAMCRLLLSQPQYFLADSNMLRETGRFDLRSPEEVERFEQVRDW VRAKDERVATWAEKCARLREWGRKQREGKEASVPVDTTRYNLPTFTPPPGPQNEWSSSDL TIFAFLRDTLAISRLLQAQPHLSTAPALVKLVDRESAQHGWPFDETNTQIDKARIRDFLG EVGVVAPWEDWTVHDKATTLPTWDKIGSSVAQQLSQVAKHGGNAKARAASKLYDSDAHDS FRHDFGQTRVFTIDDATALELDDGVSIVPAPPTSDGKQTCWVWAHIADPTTILPPEHLWA QLARVRDHTEYLPQRTWPMLPNTLVFDQHLSLGAKEGGEQRTLSIGVRVVEETGEALEVD VKAGIVRNVLRLTYDAVDKVLGFQARPPGTLVTNRSWEQGEEAALASAQVVRPTEDALLE TDAEARAQLETMLRIAQRMLRRRVKSTAIFWQYPVATVKVAPTPLEPHFESEARIPTFYA RPPRVEVRLPRDDSVLDHMESPAHLLVSEIMVAANRAGARFAVEKGIPMVYRGQGPPLSD PASIDAVLKMRNPNTGSAPPFEVLRKHVDFRAGTLSLTPGPHWPMGIHDDFGYIRATSPL RRYGDLFVHYQLKRALLPSDTPLSEFPSFDESDALKHISGFTSALKGRKRLDHTSSLFWS LWVFKQKLDLLKAATTAPQSVGTISDEDQQLFDLIANNLTGLALREATFSGVDNLWLQEV TVPELGLRGTVQMAKEHETMARGDSMPVAIEDILLGGMSRLILVPRRR