Protein Info for mRNA_4495 in Rhodosporidium toruloides IFO0880

Name: 12863
Annotation: HMMPfam-TRAPP trafficking subunit Trs65-PF12735

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1156 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF12735: Trs65" amino acids 1025 to 1151 (127 residues), 69.9 bits, see alignment E=1.4e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1156 amino acids)

>mRNA_4495 HMMPfam-TRAPP trafficking subunit Trs65-PF12735 (Rhodosporidium toruloides IFO0880)
MTSPAALFNGATLDIVLSASPALLADAPPATTIAGLADEQLVRDTDRWVERLLASKRRPA
LYFDERVSFHLVLSLPTSSTSPLSRAQAATLLLHSLPQPHLGLSADLSYVEGSPSSFSTG
PPPLPTRTSSLTGSLAAKVPLTPAPFPALAAGEDYASGQAKEVPSIVGGGTAGGGVQVAN
VTFDESRGRAWVAQGPSGGWIGVWEFSADVAFVRTQFADPRLSLTVTVSLRDDPRLAVLL
ERAQSGTVGEDLTNGMDGMAEEEDDDYMADSYDDVNLLSALSPIASTPLHLPFSRLPPTF
LPPMPPPSLPVPRPSRSFSVSHTRTLSSSSAGGASSNDVSLLHPCLGRSIRRILPIRSPI
RLEMRTFPCPVGALGLAEGGRVWERDEEDGVVLAVELSAPRGAPGREGFEVEGLEVSVEG
AAGVGQPTRTNQQHDLEVREIRLGSVAPTSDTAPKEWPILISGSNAQQNFLYAIARVPSA
ASSASPTNILSDLGRDESSNVGTVPIAVASSPTQRFTARFGAEDGAASALVGGVGQGERR
GSLVPAATAANDTATRQARAWLRNVTVVVKGRPIVSGRTAADDGYAVPDAVEAIGGNGAT
TDDDVESPTPAFHSRWHCTLDISSFARRSPPRPAIFQQPLAPPVRPTSIAAPVLPSAALP
AKPVSFPLRPASTAANVEFESVAGSKRHTMSSLASLSLKSPVMTRKGSLGSPPPPVPPHP
PAPSRTSTDRPVSTRALPPTPFSPPAPSTSASASTGPKRFFSLPHAGHSATDVSNHSTSA
LASILPSITPTRTETPPPMSAPTGKRSSLPVPHMGGLLERPKSAQRASWVSNLVSGRDSA
TPSHSGAPSRTGSVNHGETSWERRSSIATPVPAEHAAPPPPASLGLGLEAVDVPRAEPEQ
TKPMGKVLVSVSLVPLRQAKSRRPAAFAGDASGASSIGRTNENLPPPTLPGLAPPSPDPN
ASPGSGTPHHAAFSFPPASPDPSSSPSGSPATPASPVTAFSSAPSAAAARALAEHTNLAT
SRMPRINLLDVFLVEIFVFNQSDQVKRFTVGVPPEHMHGDATAREGKEVAPAGPAGTVKG
RKSASLLAEQDAKVARLVPLENDVRIGPLAPNSCASVGIRFLAIRPGSHVVEQLRLVDLS
DGSETRLSRPLWVVVE