Protein Info for mRNA_4503 in Rhodosporidium toruloides IFO0880

Name: 12871
Annotation: K12397 AP3B AP-3 complex subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 808 transmembrane" amino acids 426 to 442 (17 residues), see Phobius details PF01602: Adaptin_N" amino acids 59 to 565 (507 residues), 271.4 bits, see alignment E=2.3e-84 PF12717: Cnd1" amino acids 124 to 247 (124 residues), 37.8 bits, see alignment E=3e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (808 amino acids)

>mRNA_4503 K12397 AP3B AP-3 complex subunit beta (Rhodosporidium toruloides IFO0880)
GSGKYLENGAVLTAAGIDETKRMLASKREVERTEGLKRVIAVRPFCSLVDERGGLTRFLT
QMMTKNLPVTSFFPLVTSLLAPTTSLQARSLISLYIVHCASHAPELALLSINAYQKDLSD
PNPLVRAGAITTLASMQLPDIRELVGMAIQKGARDTSWYVRRATADAVRILYLADPTKDN
RSSLLPTLKVLLDNASPLTIGAALTAWETLCPSAWDMIHQNYRRFCNMLMDVEEWGQTVL
LRILVRYGRTFFIDPATTKALDPDAELALKSSEALLQHLNPAVVSGVVKLHYYLGPPSRH
SKIVRPLLRLLKGPPEVAAVALEDCALIAEERPDLFADHISSFFVRFSDPVESRRNRLRV
IVALANQSNIQVVLRELLTYVKDIDDVFSAEAVKAIGTCAQQVPQVAPECLMTLTNLLKS
KHDPAVSTAVLVLAALICSPTFPSTASRSSTIARLGSYLYTGKIKDASARATVYWLVGQF
AADGLVEGCGPDVVRLGAKNFAEEAVPAKLQLLTLSAKLLVLSHLSPLTPHLRPLSLLFN
YLALLARYDLAYEVRDRARFLAGLVASGGIGKGKGREGEGEGAKVMLGEEQFRQGLQVED
LTGSNGGNAEEEAEGKQSLTAEQVRKVLFEGKTFDGFSHRSFPPEAQLGTFTLSLPGKRP
FAGESIPLSHVPPYPSTVPPSSIRDPPASSSSSPSRSTTPLQGFGSDSFRSSSSTSRGGS
KVVLTPGSASGSRSATPTGVSAAAAAARKKQSLNDFFAESETSSEDEEEDEDEEEEEDES
GDEEESEEEDEEEESGSSGDDDGDDRVR