Protein Info for mRNA_4512 in Rhodosporidium toruloides IFO0880

Name: 12880
Annotation: KOG1152 Signal transduction serine/threonine kinase with PAS/PAC sensor domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 547 PF00069: Pkinase" amino acids 192 to 288 (97 residues), 35.2 bits, see alignment E=1.9e-12 amino acids 372 to 539 (168 residues), 123 bits, see alignment E=3.1e-39 PF07714: Pkinase_Tyr" amino acids 256 to 535 (280 residues), 52.5 bits, see alignment E=9.2e-18 PF14531: Kinase-like" amino acids 376 to 527 (152 residues), 26 bits, see alignment E=1.1e-09 PF17667: Pkinase_fungal" amino acids 392 to 464 (73 residues), 24.8 bits, see alignment E=1.9e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (547 amino acids)

>mRNA_4512 KOG1152 Signal transduction serine/threonine kinase with PAS/PAC sensor domain (Rhodosporidium toruloides IFO0880)
MDACVVAQPVRQPLTFTTPSSSFAQSRMDKGARPVSMSIASSSSATTSTSSKPYGVQTRG
ARADHYLAASPLTPSSPHPPASSSIHLATSSHRDDEHMSDAFVTPPQASRTALRPLSIDM
SPSAAASARLPSKKGKSPVMPLTPPLTPPYLDQAALLPSLSSPTPAHPPRPTTVSGRALA
NHPLHPLFASTYTLADELGAGGFGFVVRASRNHDSRSVAVKFIERAKIPSHGWVKSRSWG
DTPGLTQPTGPKLVPMEAFVLRSIRHEGVVAFIDLFEDDEYFYLVMEHHGSPWQIPEKHA
GEQQLVGPPSPSSAAMSPTLTSSWPRLAPGQQTVTPTSSPTMCSSPLPDSPASSPTYLAP
PRPPPMMRRSSHDLFECIEQHSRFDERTAKYVFAQIVEIVYALQQMGICHRDIKDENIVI
THDYRVKLIDFGSAVIFDPRQPSPVYHRFFGTTSFAAAEILRGEAYQAPPAEVWSLGVLL
SILVTGECPFSDAEAAKSGRLSKPKIRVQPEIEHLLRACLEVDVSKRISVAQIRRHPWLA
DIYSRRA