Protein Info for mRNA_4513 in Rhodosporidium toruloides IFO0880

Name: 12881
Annotation: K00981 E2.7.7.41, CDS1, CDS2, cdsA phosphatidate cytidylyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 644 transmembrane" amino acids 238 to 265 (28 residues), see Phobius details amino acids 316 to 337 (22 residues), see Phobius details amino acids 357 to 377 (21 residues), see Phobius details amino acids 388 to 407 (20 residues), see Phobius details amino acids 413 to 435 (23 residues), see Phobius details amino acids 454 to 474 (21 residues), see Phobius details amino acids 535 to 556 (22 residues), see Phobius details PF01148: CTP_transf_1" amino acids 305 to 598 (294 residues), 221.8 bits, see alignment E=7.3e-70

Best Hits

Predicted SEED Role

"Phosphatidate cytidylyltransferase (EC 2.7.7.41)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 2.7.7.41)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.7.41

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (644 amino acids)

>mRNA_4513 K00981 E2.7.7.41, CDS1, CDS2, cdsA phosphatidate cytidylyltransferase (Rhodosporidium toruloides IFO0880)
MARGKSASVTRPDVASKTRFDALAFDAGESSGDEELPPPATLSPPGPATPSKKALARQRA
KLRKQGSSNNLNSEAATDSDASFAPSSSAIPPVPALPSKVQIQQTANGVKEQVQEKAEEV
KQAAVKAAKPVVQVIAPAVEREEPKPPSSLSRLAQPPSAPESTTDGDSLAGYDEDEDDES
DEDETEEASAQTSPKTATPRAASPAPAAAAEGDKPKEAYTGADHDPKKKLQAIITRTVWG
FVLAGGAIGLVLMGHVYVIALIFVIQAMVFKELTNLFDVGYSGAHVTEEGKMTRTPEKEA
KRRGRKEQRERWSRQMAWYFFAVTNYYLYGESLIYYFKHVLTLQASFLPTAYSFSQHHRL
ISFGLYTIGFVSFVATLNRSSLRRQFGLFGWIHMSLLLIVVSSHFIVNNILEGMIWFWVP
VALVIINDIAAYVFGMAFGRHQLIKLSPKKTVEGFVGAFFFTMLFAYVWATIFMRYNYMI
CPAQDLSTNVFSRVQCKPNPCFEWHELPLPSAVTDLLEPITRRHITSIPWAPFQLHSIVL
AAFASLVAPFGGFFASGFKRAFGIKDFGDTIPGHGGLTDRMDCQFINGIFTFVYYSAFVR
ESYITPTSIMATIATHLTTEQQVELLGELSRLLMQKGVKAAKPW