Protein Info for mRNA_4536 in Rhodosporidium toruloides IFO0880

Name: 12904
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 transmembrane" amino acids 389 to 407 (19 residues), see Phobius details PF00172: Zn_clus" amino acids 104 to 135 (32 residues), 24.6 bits, see alignment (E = 1.1e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>mRNA_4536 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MQYPGYPYPAPPGYAYPPYQPSPSTSQAQHHQPATTIAAGAPAGDAGPASGSRKRARNSV
GGASAKGKGVRAKRAESDDDDGESVATGAGDDAEAKRKKRQPLSCGECQRRKIKCDRQMP
CSACVRRKRTEYCSFDDEDANSPYALNSDVRAIGRRLAYLEQLFHQANPHLASSSHTAFI
GSPASASNSSVHASPSVSTRPSISSHLPAPSASLPLPSSSAPPIHPVNENGKQRDDCQAT
PSDTEDAVADLEEQTFGARVPVLRALTAAAQSNVKRYNYVKVPDMELTSCLTSILAEPLS
FDQDGRPRSAVRLGLDLAVPTSELPAVRHDALAQIFAVLPDETIARFLIEKYFAEMEWDF
RVLDPVAFPVEHARYVEMLSSGRQDLIDPLWIAVFCMVLALSLEGFWSRPNGMKDLGLFR
GLQEADLRDLPSVWHDAALRALQLGEWGGTPRIRTLQCCILLGQYIQISSSSGQQGRFLG
WAASAFRVAQRMGLHRLGSDPQKMPPDDPALPPGCNSLKREMAVRLWHHLVNIDSWLSDS
PCLRCYMLHPSQCSSRAPTTPKSRR