Protein Info for mRNA_4550 in Rhodosporidium toruloides IFO0880

Name: 12918
Annotation: K16186 RRAGC_D Ras-related GTP-binding protein C/D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 537 PF04670: Gtr1_RagA" amino acids 152 to 374 (223 residues), 185.7 bits, see alignment E=4.4e-59

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (537 amino acids)

>mRNA_4550 K16186 RRAGC_D Ras-related GTP-binding protein C/D (Rhodosporidium toruloides IFO0880)
MIDTRCIAFFSPASAGRVSQVVERCLAAAIHARRPTKRYEHSKALPGGAPPRVTLLCFFS
LAHLARLLAERLLPPFFNFGYDATPCFARPKPFPPSTNSHHSTLDPLSSSIMQPQPTYGT
AQMVSPAQGSPVAGASTQQDATVDGKGRRLPRVLLMGPRSGGKSSIRKVVFEGMAPNDTL
FIEKTNKSSSDDINSFLSMRMWDLPGSQLDPEQLNLSFEDTDAVIFVLDAQSTLHDVIRK
LSVTMHKAYTANPGIQFEIFLHKVDGMSEDYRLDTLQNLRDRLTEELFDMSPELESNMNV
FYHLTSVFDTSIYEALSKVIQKLIPEQAMLERLLDLLCQQCSMDKAFIFETASKIYIATD
SAPLDNQTYVICADYLDLVGDFAQLYETPALSLPPAQGDTSLSRAGTLSRSTGRDASSSS
TPSATGSRRESSTAASKPSSTISSPAKAGAGRPISVASSVGGGLEGKRVTRRLPHSKVRL
GTGATIAQWSINDHLSLVALLRPHTQDQHSAMIDYNVATFRQAVLAIFGVGVSAPIG