Protein Info for mRNA_4552 in Rhodosporidium toruloides IFO0880

Name: 12920
Annotation: KOG2263 Methionine synthase II (cobalamin-independent)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 PF01717: Meth_synt_2" amino acids 178 to 390 (213 residues), 39.4 bits, see alignment E=4.7e-14

Best Hits

KEGG orthology group: None (inferred from 59% identity to ppl:POSPLDRAFT_87012)

Predicted SEED Role

"Methionine synthase II (cobalamin-independent)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>mRNA_4552 KOG2263 Methionine synthase II (cobalamin-independent) (Rhodosporidium toruloides IFO0880)
MSAHVLPPFRADHIGSLKRPAELLAKRADYDAGKCTREELKAVEDEMIRKEVKRQQEIGI
KAVTDGEFRRHMFWDGFHNNLEGMTVVKNPGRELFKMYVPDIKAFFESHAEKPGDTMICT
GKLVRNKPMYRPEFDFIKTLVKPEEVKNIKLTLAAPEWYHLRHGEHAYNREVYKTDDEYF
GDLAKAYREELADLYEAGCRNVQFDDPLLAYFCATSMLEGMKAEGTDPAKVLDQYIKLYN
DSIRDVPSDMTIGLHLCRGNFKDGMHFSEGGYEHISKKLFNELNAHAYYLEYDTERAGGF
EPLADLPTNKTVVLGLLTSKFPQLEKKDDLVKRIHDAADFVAKGSNQTRDQALQRLCLSC
QCGFASHAEGNPVSYDDVATKLGLVVETAKAVWSDA