Protein Info for mRNA_4561 in Rhodosporidium toruloides IFO0880

Name: 12929
Annotation: K06990 MEMO1 MEMO1 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 TIGR04336: AmmeMemoRadiSam system protein B" amino acids 4 to 329 (326 residues), 169.9 bits, see alignment E=3.4e-54 PF01875: Memo" amino acids 6 to 328 (323 residues), 250.3 bits, see alignment E=9.9e-79

Best Hits

KEGG orthology group: K06990, (no description) (inferred from 53% identity to uma:UM02957.1)

Predicted SEED Role

"COG1355, Predicted dioxygenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (335 amino acids)

>mRNA_4561 K06990 MEMO1 MEMO1 family protein (Rhodosporidium toruloides IFO0880)
MSSRRADHAGSWYSSNGKQLDQQLSGWLEATASPKEGEALREAPVKGCKAIIGPHAGYSY
SGPAAAFAYKCIDIESISRVFVLGPSHHVYLDGCALSQCKTYDTPIGQLPLDLDTIEELK
RSGKFELMDQDTDEAEHSIEMHLPYIRKVFEGRDIRIVPILVGSISTASEKSFGRLLAPY
LADPSTLFVISSDFCHWGTRFRYTHFHPPDTDDLTLGTSLTSGTFSSVVGSSGAQVWQGI
EKLDKLGMEAISFDGRTKKASQAHDDFAAYLRQTRNTICGRHPIGVLLGAVAALEEQAEG
AWRCEWVRYEQSSRVKRLADSSVSYASAFVAFSSS