Protein Info for mRNA_4563 in Rhodosporidium toruloides IFO0880

Name: 12931
Annotation: KOG1601 GATA-4/5/6 transcription factors

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1025 transmembrane" amino acids 426 to 444 (19 residues), see Phobius details PF00320: GATA" amino acids 742 to 772 (31 residues), 48.6 bits, see alignment (E = 2.5e-17)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1025 amino acids)

>mRNA_4563 KOG1601 GATA-4/5/6 transcription factors (Rhodosporidium toruloides IFO0880)
MASETTHSFHLPSLAQAPLSSSLPPPSALDPTHDVSTFFSNTGAPSSSSHPMNPHPGHAL
PFPPLIPPASNGYGHPAPFPSYPPTPYSAYPTPGTMHAFPPAHASASLPGIGQVRCYWTI
LSSKLEYAYLDPVLDTHLGAWKDKFVGTSVLDWVHPDEREQLAEDLLPKEDSVGGVESTG
VFGSVTRCRYSRLIRIMRELGCPHPPSPPDAALYAIDDDYLNLEVTTSWIAGDRKGKGKG
KEGLPNGAVLAFWHVATDKDPAHDSDPQHRTEWSNWCGASLEYGPYLTPQQCDDLLAALT
RLTSPSSSSSADSPTSADDHKGALSSVLNEDGTRSDGEDSGGPPPHVFQILDHAGRPIIT
FPQSEGTGEEGRKRRAYDAERFSALAREVMSRPREAAQSRTSCTRRYRSKHPVMRDGTLT
TIESVVIMYGVITFACFQTGGVYLSSARKAGLSLVTSGDLTGSNASAHDFALEDVPHTPT
VGGPAANGKRSSLDGRFEGSNGLDQSQPNKRFKADTDGPPVLPRLQTVAASPAAEPESPH
EQSHSHLNGLSISTSGRSFRQNLDVDTITAGGISPTVASASAILGSLGDAPVHHSPPLHG
PGPAQTSYAAFYNSHPFEQHHPAHGYPTASAGYAQYSPHPLSQSHSGYFPPAPQSPHEPA
SAHNGRGLYPPPGQPVYDLPQPNVQPSASPTPSPTTHHISQTDFDTFAQSIPVPPAPANS
SGKKPPKQRPDGPVFKPNPKACESCGTVNSPEWRKGPTGAKTLCNACGLRYARSVARAKK
QAEIAANGGVAPKKGKKKGKAAAVASAVTGDDAPQASGSTPYSQEASPMPGSQYDLVSAY
TRGPSHPTPKPYTPYHTTAPGMPGQYSHVGSPTVTHAPQYPSPTLPSPSSNSYFPSSMAY
SSASGYSAATAPMPVPTHSPLPPVSHGGFDYSRAPSHSPFPYPQMSSAGTLSPHMPPPIH
SPNPGAYPSHSAPTHSPHMHALSPYPPQHYGWPGQQQQHHLSSQQQQPQQHQQHENEEPQ
RGGDP