Protein Info for mRNA_4564 in Rhodosporidium toruloides IFO0880

Name: 12932
Annotation: K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1101 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00443: UCH" amino acids 37 to 1027 (991 residues), 140.2 bits, see alignment E=8.8e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1101 amino acids)

>mRNA_4564 K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45 (Rhodosporidium toruloides IFO0880)
MRRRSSIALPSFGVRRGSNASTSSSVKDEIVRDIFHVGLVNLGNSCFYNTIVQSLSATQP
LSDIINAAPDSSPALQVLSPSSPSYNPDLDALPSPLPMTAALLVLLDKLDPTGKDEDAKP
KGKKAFNPKSLLRQLSLKHEEYAEATQQDSHELLRHLIDGVMMEEQDLIKKILEATPDTL
PHRPSMHERLETVRPSDHSTSVPDQAIVSESEEDSGDESDASSASSSSSSSSSDAESDVE
ETRLTERQRKKRKLRPFVGSIFEGKLASFIICDECKNVSLTKEDFMDISLSLKDETTNRM
RKRDRIRRTLQAGFFSRKSGKSTASSGDDSSSKEPPSIKTAPNGVRRERVSLSENEGSAS
PSEADETDEDHIRPRMDRTAGGGARSRRNSLDPSRLSRETARETSLQVPGERSAETRNSS
RDASPLGRALSVLSNGSGEKDAQHSSSSHHGHGHHGHHHHHFHFHRRPKIPKPTPEQVAY
IKKVLVDIPGPSATQGLPPGLRVARPPGSSAPPAIPAPTGTPTHSQDSVSSTTSSLSKLR
IAAPAVDWQNTDLFECFRQFTSVEVLEGENSFACRNCWKWLNPDLEAKRKEERARKKRER
EERRRARRAAKKGLANGDGHAAGQNGHAVVGEEEDSDDERDPADVTARNTPAHSPKAVPA
FAPLEEIPPIQPIEAAVPAPSTNGTSIPPVSPTTTTAKSGAPMRSFSISSAATSNAVSVS
TDYEGGISSEAFETTTDEEDNTSPGLDDAASLSGSLGALPSTEGKKLPLTVENVQAVAAA
STAPPAGSLAVPQDERRGGPAASPAPSSAASLAPPPPPAGSGASPSLQPLQGHSRPTKPP
PKKQRQILRRAHKRYLISPTDLPPVLVIHLKRFMQTSKSSLFGSAFVNLKKRDDAVSFPK
EMDLTPFLAPAGKPPRVSPNAFGSAEAEEERRSRKTSRNGGVDRPDSSGTEVSEAIEVEK
EVHNARYRLYAVVVHHGTIDTGHYASYVLSNRHGKASERKWLFCSDEEVLSATEAEVLRS
KAYMLFYERATPEQPSTGASASQPPPAPSSTANAISVAGDSSNGDAAPQPLALPDLTEEP
APLSHPPTTTVTSPPPAAALA