Protein Info for mRNA_4568 in Rhodosporidium toruloides IFO0880

Name: 12936
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 959 transmembrane" amino acids 90 to 109 (20 residues), see Phobius details amino acids 115 to 142 (28 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 186 to 204 (19 residues), see Phobius details amino acids 341 to 362 (22 residues), see Phobius details amino acids 387 to 414 (28 residues), see Phobius details amino acids 421 to 445 (25 residues), see Phobius details amino acids 451 to 451 (1 residues), see Phobius details amino acids 455 to 472 (18 residues), see Phobius details amino acids 484 to 507 (24 residues), see Phobius details amino acids 726 to 752 (27 residues), see Phobius details amino acids 781 to 801 (21 residues), see Phobius details amino acids 807 to 827 (21 residues), see Phobius details amino acids 844 to 861 (18 residues), see Phobius details amino acids 867 to 886 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (959 amino acids)

>mRNA_4568 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSRDERGIAVSSSRAIVSRNSLSSSSSASSHPTRFARCSLFRALNTMANTNAPATSHTQP
PPPAGAQSQLGPFARFQRWLKQSDTLEERLFVASVLLYILLIPLAPLLWCAGVALFLYIL
YIYFLVPFFLILTLYSWGYLTIKIPYLPPRFQRVIDALLLPHAAWSLAQLAMPNLVRPIA
TGVDLWLKYLAVTALFDVHVLPRLLNTAVELERCLQKTQETAQQSAHKLERESVAVPSRT
VTLPPRLAAPCPLPHTQRFATRGGMGQTAPKASAPPASAPAKAPEPATPVPASVTSSPTA
GFFSRILRWLEQYNTVEQRWHAVLTCSEIFTNGKAEGDSELLAVLFCPLIPLAIIAGLFR
IVDPGAITDVVGGVVSYEHWKNFGVPLAAAIEWAAGTLLHYLVFVPLAWIIWSVGAAIPG
ALFFVYGVVPLSLLISAYCLGNFALPCLPFLPLPFQRVLNALAFPYIVWKALERFAALVP
YKANAYLFLFYVAFTAFFDIAPLWDLLAAAAERETKAAQLAAVKDSAAKATDEGAKSCGA
ADVKANKADPAATKPHTAGRQDASTSSAPCALPLQHPAVSSFLVALCTSKSRLRSVSFVL
HTACKVSERLRKTSEEKVREGCDWSRFRPEIANESRLPLRPSPSSLALTAVSRSLRPLER
ETTAMAGSYAQTDAAPATSASNSDDAVSPPAEQGVGYALRLKRWLERSNTMEKRTEAVYC
LDRVPLGPLALCLMSSSATLWGLTLMFVICWYQDPDFREEVHVRSWDEVTSILQDSLRRG
VLFLLDKVILPQIPTLCALVFGPLAAWFAYCAVGIPAILLCSAYSFGRLTFPSPFTGPSA
LQRVWDAALVPFVAWRLLVLLEPLAPLSPYANTLILYLAATAYFDVHPLARLLDLAVELE
QVPKSGKLEKDGDVAVKERKQGWAESIENFEMLRELERENTLLKEILARRSRESPQAKT