Protein Info for mRNA_4585 in Rhodosporidium toruloides IFO0880

Name: 12953
Annotation: SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 transmembrane" amino acids 42 to 58 (17 residues), see Phobius details amino acids 78 to 101 (24 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 191 to 208 (18 residues), see Phobius details amino acids 220 to 241 (22 residues), see Phobius details amino acids 257 to 276 (20 residues), see Phobius details amino acids 397 to 419 (23 residues), see Phobius details amino acids 438 to 462 (25 residues), see Phobius details amino acids 470 to 488 (19 residues), see Phobius details amino acids 495 to 514 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (536 amino acids)

>mRNA_4585 SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MWALRRTRQALYAILPASAQPTPPHTSTRTGSDAKGAVDMRTTGAAVLLGVVLVAYTLQT
ELASYAQHELGYKKPYFLFYLTHSSYIFLFPLHLLVDILAFKYSAPRAYTSLRASVPSSP
VLRNGRTAAGRKPSTPGLMDEGLLAVTKGVAQEEWVKHMAKKALILTFFISAPALSWYAA
VPLTSMTDITAIYNVFAFWAYLLSLYYLPTPATSRTSRFIRMINLVSVLLAVCGVFVIAY
GDAAAAGGTSGEAKNRLVGNGLALFGSLAYAGYEVWYKIKISLSETSHDTPMTPMTRTHA
RATSSLSDDDDEPSSRLVSNGKDDPDAPSETSSLLPSPPGTPDGTASPPLHPAANGASTL
PKHAPSASTSRTRPSPLARTPSYRSAALPPRITPTLLLLYSNTITSLIGLCTFGLLWMPI
FVLDWCGWEKFEWPPDGAGLVLVGIAAGGIVFNGGFMILLSLWGPVTASVANLLTLLLVS
LADALFVPSAPPMTTSTLIGGGMIVGAFAGLIIAEVRGEEGHAKGGGVDKTDDDEV