Protein Info for mRNA_4592 in Rhodosporidium toruloides IFO0880

Name: 12960
Annotation: K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1079 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF10537: WAC_Acf1_DNA_bd" amino acids 26 to 125 (100 residues), 110.2 bits, see alignment E=9.5e-36 PF02791: DDT" amino acids 391 to 447 (57 residues), 43 bits, see alignment 6.8e-15 PF15613: WSD" amino acids 899 to 1024 (126 residues), 112 bits, see alignment E=2.5e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1079 amino acids)

>mRNA_4592 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A (Rhodosporidium toruloides IFO0880)
MPLLRRRPVALLPLPPLDGLSPSSPVFYLKATGEIFLDYEQYAARLTFLLTRQFQCEYSG
KSGLDYFSALQSEKAESKVVRERFPDALKGKVLGSVQFQVMGRLDSLVDLVYDRYKDRYF
KDEKVFVDIAGDKYFALISNVFPPQNIRDQVASSAPSASTSTDTDTSSLYASAAHKTGVD
MNIDPKTARAEDDPDEYLYTLQLMDEEGKFEGSTMEVKHRSLSRDRLAFSKSILKRYLRE
CLMRDASIGAPWIVKPSIARAFDIPLEQSGSIEERNRKAREAKLAKRRKAGEGGGGAGKE
REEGEGKQGPAKRRKTVDGSATPASASTPLDRAATTGSLPESKKPIKYPIEDLDLDPMSI
IDGRVLRRVNSELPTLPPKPQPKRDLLVPEENFDRFVETWNMLNVFSKALNISPFSLDDY
AGALQHPHAHPRCILLTEIHASLTNIIGTDNSRVLGSTTAVPSYGRGGAAAAAAAAAGDE
TGTPAAEGDDQLADAGAGAAAERDGTVEYEQIPYEESELNKLVRLGISHAKRWDRQAKLK
SADKREGWEKHLIGALCQRGGPVHMPNFVRIMRHLFKGHPALPKQDWYPGDEEEAEEVKP
KKEEEGAEGDDAERKPPATSTSTAKQDEDQRDDVDQLGTPPPAADSPSTKAGEYDAEPQY
FTLALEDKLDIVAYLCTLVMGSKVVRSFVDESDARLTELRKAKADVNKEKKALIEKKAIL
DAGGKIEPAAALIGASATPAPANGTSTPSATPAAPPAAPAANGSTSRAPSEATETPSRAA
SVKPAPAAGDEDEEEDQLASDDDDERSVAPSEAGSISYLSRRQAALEEKRLEKLQEGGGG
RAGSVASGSGTPRGRTSTGGTGAKDAPRAPPTIEDLMRQNAHKDDFVDREFRRYQGVARC
RPLGKDRFHCRYWWFDGIGGMDLVQLNGAGEEVVTYGAGRLFVQGPSEEDWEVICDVREK
GEEGEKGARERRMREEVVEKPEQLLGVNEWAYYENDEQLDSLVAWLNSKGTRELALKTVI
QKWRPLITAGAEQRRYDAANPELPRYEAPPGKRRASRKDRQEPEPDRTYMGWRNQIARF