Protein Info for mRNA_4600 in Rhodosporidium toruloides IFO0880

Name: 12968
Annotation: K08343 ATG3 ubiquitin-like-conjugating enzyme ATG3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 PF03986: Autophagy_N" amino acids 6 to 146 (141 residues), 145.3 bits, see alignment E=1.8e-46 PF03987: Autophagy_act_C" amino acids 227 to 288 (62 residues), 59.5 bits, see alignment E=5.8e-20 PF10381: Autophagy_C" amino acids 361 to 384 (24 residues), 44.2 bits, see alignment (E = 1.6e-15)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (495 amino acids)

>mRNA_4600 K08343 ATG3 ubiquitin-like-conjugating enzyme ATG3 (Rhodosporidium toruloides IFO0880)
MLGSIQTHFWAVRDYLAPVLRDSKFKETGRITPDEFVAAGDFLVYKFPTWQWEAGEPGKA
RDFLPKDKQYLISRNVPCLRRVSQLGQQGGANDEYAETLMHFTAELDEGEVAAGDAGDEW
VATHTSAKDPNSTSEIPVIGDIPDVDDPSAGSSSHAVDGLSSHLADTSIQADDIPDLDDI
PDMDDEDAIGGGLIEEEDDAAVKVEPVKKEGGRSDNIIQVRTYDCMITYDKYYQTPRMWL
LGYDEQKRPLPPTSALEDVSSDHALKTVTIEPFPHSSSLSIASVHPCKHSSVMKKVIERM
DGNVRELQRREKAASGSGVASQEKEKKTGGGKWLGLGKKREKSEKGDKPDEGDEDEEGLR
VEQYLLVFLKFISTITPTIEVDSTASIVRARCLAHRPLCTPLLTLIFAVSAALPELSTSF
DTSVFAPAPLHPIRLPLPRQPLEHLHHLASVYTCAAHESTFLPASTTPVSTFSLLSAFSS
VPVHCAYPPNILQVP