Protein Info for mRNA_4603 in Rhodosporidium toruloides IFO0880

Name: 12971
Annotation: K07119 K07119 uncharacterized protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 PF16884: ADH_N_2" amino acids 119 to 168 (50 residues), 57 bits, see alignment 2.6e-19 PF00107: ADH_zinc_N" amino acids 263 to 391 (129 residues), 73.1 bits, see alignment E=3.2e-24 PF13602: ADH_zinc_N_2" amino acids 296 to 433 (138 residues), 35.9 bits, see alignment E=2.4e-12

Best Hits

Predicted SEED Role

"Putative oxidoreductase YncB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>mRNA_4603 K07119 K07119 uncharacterized protein (Rhodosporidium toruloides IFO0880)
MSLEPTATASSSSSTASPYASSSSSASTPVSSPATTPSLSSCADDCAPFAPISSLLASFN
PYPPSPALIEAAMAPLPSTLPSSYSRITLRERPKAAIDPKLDGSGTFQLERGVKMFSQDE
VKPGEAVIKVEWVSIDPAMRGWLNPTRSYVPPVAIGAPMRALAVGRVVLVPKTERTVEGG
NDKSAPFMEPLKVGDWVTGVAGWAEYAKLPAKDLQKIQIDKDISPTYYLGALGMTGQTAY
WGIHDVGKIKPGETVVVSGAAGAVGSIACQLAKIHGCKVVAIAGGKDKCRWLKEDLGIET
VLDYKDADFKKKFREIGYLDVYFDNVGGDILDMCLTRLNKGARIALCGAISAYNDPNPKG
LQAYLNLISQRAKIEGFIVFDYADRYHIAAEEMARYIRDGRLKLRETHANGLEECVDALV
GLFAGKNQGKMLVKIADDGAKL