Protein Info for mRNA_4611 in Rhodosporidium toruloides IFO0880

Name: 12979
Annotation: K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2057 PF00512: HisKA" amino acids 982 to 1050 (69 residues), 54.5 bits, see alignment (E = 2.5e-18) PF02518: HATPase_c" amino acids 1105 to 1206 (102 residues), 75 bits, see alignment 1.7e-24 amino acids 1723 to 1857 (135 residues), 88.4 bits, see alignment 1.2e-28 PF00072: Response_reg" amino acids 1300 to 1410 (111 residues), 79.4 bits, see alignment 6e-26 amino acids 1918 to 2044 (127 residues), 58.1 bits, see alignment 2.4e-19 TIGR00229: PAS domain S-box protein" amino acids 1446 to 1560 (115 residues), 25.7 bits, see alignment 5.2e-10 PF08448: PAS_4" amino acids 1454 to 1557 (104 residues), 29.3 bits, see alignment 2.3e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2057 amino acids)

>mRNA_4611 K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK (Rhodosporidium toruloides IFO0880)
MGQPHRAGTSSGASELAQLPLVAFLNASPSPSLVLPLAPLVDALRTRQSHPALVSPTKTP
LWNGHAAPVQPSGATRTAGSGIGGGEGKGAFVPTTASPDTLPGMVELLNVKTPVANSTET
PTTSGGDYFSLTADIPPVSSSSISSVSTASTSSSIDSLASSTSLTDDKPITPLTDVDDLD
TGMSSLPTFSPVTDPRQVLLEKLLPALHPVYRNEAWRNLEATTRRNSAATRPSISGPTLV
PRARGSVSGRWNRRSGSGSARTKRTTEEEDSLMTGAMPAGFSQPNSRVASPLGTVEEEES
NGMDTDEEDGASMSGLDETDYDDDDEPESAYAFLAPEDHTALLAFVLDLVEDMELSTPTL
GAQPYSPGSISPTSTPASGGEAHYSSTGSGLPRSNFSFGPTPRIAGRLGARAPHTCRLDD
FVISATICPAPGSSSSFDITPTHPQSASTTTAPAGFLILTIPPPTPPLNVTTWPPRSTNL
TIRTSRTASTQSSSIFTTAAPPTNPMPADASLGNVYQSPSAEAAVKLQSLHPPHSPTSLP
VDSIPRQTTDPWFACLGETEMGLRIRNHPWHETAVGPIESWPPELRTMVSSILASPFREC
ILWGPEYTILYNDHYVETAGEKHPALLGLPCKEGWKEIWDGLDGIAKRTMAGETCFFRDH
YLAMERLGFVEETYHTFSYAPFYSHDGKALGILNLSIETTATVIAARRLATVRDLVSNTS
LARTVDDFAECALRSLANNPYDLPFVALYTVSEVDRKPTKKEVRAGYKCSNRRIIKLENR
GTTGIPEGHPFLIHEALVDITPPKSRQSSSSASTGTGSTATMRDRLLDAATLSPASAAGS
PAAPSSSSSSSGSISGFSAHAAFLRSEEAANGWSWPFEEACLKRDPVLVEDLGPLAETLD
RSRGWSYPARQAVVLPVFVEANQVVPAAVLVLGVNSMGRYDHLLETFHNLVARHVAIGLF
AVLAAEQDRKRAEELVRLDRAKSSFFSSISHELRTPLTLILGPLEDILSGSEKEKLDASQ
RDKLQLVQRHSNRLLTMVNKLLDFSSIEGGRMNFKYRPVQIGALTRDIAVLFRDAIERTK
IKYTVECDDDPADCLPIYMSPDIWEKICFNLIGNSFKYCIKGEITVTLRSTRAEAVLSVK
DTGIGIPESELGKIFERFHRIEANSRMATGTGIGLALTLELVKLVGGQLEVESELGKGSI
FTVRLQRGHTHLPIEQVDHTPEDTDFVAQFQNRNLAFVEDAASWRYDAEAEAALEMVPMS
SDSSTAGTVAGSEHGNSSGSGSGEDYLSGPDVLSLKNRTVVLVDDSRDLRTYISSLLSKH
FNVVAFADPREALSYINSTPPSLVLTDAMMPYISGRELTSIIRRNPQTALIPIIMVSAQA
GTEARAEALEGGVDDYLAKPFQARELLARVRVHLQLGLMRVELERRVEERTRALIESEAR
NRALAERYSMLSTVSPVGVIQISPKGEILYGNPRWYEIVGMPINRPLSEWTEWVTPEDQP
KVMHLWKLATEGGTADTSERQFRFTNGRWAQLEIRASTEVGLPDGYVGALTDITRQKEVE
MLHIREVEQRAADAEENRRNTEMFLDMSSHELRNPLSGVWQNAEVVSASLERYVELLDNL
RQGQSVSHEELDDLYNEMLENVEAVESIILCASHQGRIADDILNVSKLNMGLLTVNLMPF
ELVSRMKDVLRAFEVECSQKSIALRLRAGDSVKALGAEWIRADPSRLHQILLNFLTNSIK
YTADSSDRRIVVHVEAFETQPPVKPQAMRVSQPPPTELANGVWVVVAVEDTGRGLSEEEL
KRLFARFSQAKPSSDQYGGSGLGLYVSKKLVELHRGFIEVQSKLGVGSVFSFAIPAERAS
PPADPVAVPTVPALAMVPTARSTKRPHTASNDVSKANKSTKISQSPRPEAEADRPVRILV
VEDNLINQKVLLRQLKNAGYDVTVVNNGQEAVDALAADAKQTSESSSPNLFAAVIMDVQM
PVKTGLEAVRELREWERTGQISHRYPVCAVTGNAREAQQSECLAAGYDDVATKPYRLEDV
LAKIIKMTGLPTPKPSN