Protein Info for mRNA_4612 in Rhodosporidium toruloides IFO0880

Name: 12980
Annotation: KOG0001 Ubiquitin and ubiquitin-like proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 PF11976: Rad60-SLD" amino acids 91 to 158 (68 residues), 48.2 bits, see alignment E=7.7e-17 PF00240: ubiquitin" amino acids 92 to 163 (72 residues), 98.2 bits, see alignment E=1.9e-32

Best Hits

KEGG orthology group: None (inferred from 46% identity to ngr:NAEGRDRAFT_30864)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>mRNA_4612 KOG0001 Ubiquitin and ubiquitin-like proteins (Rhodosporidium toruloides IFO0880)
MGETVRSRSSASVTSASIVYVSLPSQNNRDVKLPNTNDNFQAEIQKEKVVPLAHSRLVLH
DDPLEDGCPTNQLKSTRAPLRLAEKPCGRVQILIKTLTGSTTTLEVELSDTVYDVKTKIQ
DKEGIPPDEQRLIFAGKQLEDARTLRDYGVERDTTLHLSLRLRGG