Protein Info for mRNA_4622 in Rhodosporidium toruloides IFO0880

Name: 12990
Annotation: K20168 TBC1D15 TBC1 domain family member 15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 918 PF00566: RabGAP-TBC" amino acids 568 to 815 (248 residues), 109.4 bits, see alignment E=1.1e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (918 amino acids)

>mRNA_4622 K20168 TBC1D15 TBC1 domain family member 15 (Rhodosporidium toruloides IFO0880)
MGGGPRTPPLPSHLVVSRSSEDLVEVSLLREDQDTLEDPADMPQPAPHPPTHPTSSPPGT
ASSTPTDPLSSQATTSADMARLSLGDEGDLAELLWSKSAVYVHPSQQGRDSALPGFLSIV
RVKQGEGWQHLVSWIPEKLVEGTRDFEAYVLVELSSQHETDVLVHLAPSFDPQDDTGLNS
PRSHAFSHPITSLYSVQVQPPTLTSWIGTVTLSLFGGVTLPPLHFHDDESKSTVLDQDRR
ASSLGVGGSHAARQPAGGSLAPSWGGEAFVKQLKRHARTVRSRLNPSCYLINPSKVDLEA
HAGGLYPTWDEDAVPDEALRGMRGRLGEGERGDRARDRAQQQPQQEARTSILHQSSPVSR
KSARSRPQQEREEWPDDPDAMLGGDGAARDGGNGGMDALTFSVLSGFSRITRGARQISQQ
AASTVLSHPLAKPLAKHVPKPIAQLALAPGEVSKLTDAAGVGAYDSARVYLAKWARIVAE
EGERARRAEYGVDDSSFLEEELGESTGVFEVLAKTYRIGHKPRSTRAPKTPIQLEEWHAW
FDSETRQLLLDEKEARRRIFQRGLADNDVRKEVWPFLLAVYPWTSTGEERARIAEAKSTE
YERNKRKWMADDELQKTERFLEEDHRVEIDCRRTDRTHPLFLSDLPPDENGGAHPPTNAH
ITACHDVLMTWVFAPTDATEQTDPPAVNQYVQGMSDLFSPLYVVLEGEQWLAYSCFETVM
QRQADNFREDQSGMKRQLSELQSLIRVMDRGLYRHLEETGSLNLFFCFRWYLCSFKREFG
FDDTVRLWEILFTDHLGRHFHHFVALAILEANRDVMIRYLREFDEILKYVNELSQTLDLS
TILGDAEVLYYTFRDVLAAASPAPPPAGQESLRHRKPPANEARVGAFPPTAEDAEEARRA
KVRDRTAREVEGLKELLE