Protein Info for mRNA_4631 in Rhodosporidium toruloides IFO0880

Name: 12999
Annotation: SUPERFAMILY--SSF103506

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 transmembrane" amino acids 44 to 62 (19 residues), see Phobius details amino acids 112 to 131 (20 residues), see Phobius details amino acids 145 to 170 (26 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 313 to 335 (23 residues), see Phobius details amino acids 554 to 574 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (583 amino acids)

>mRNA_4631 SUPERFAMILY--SSF103506 (Rhodosporidium toruloides IFO0880)
MSSATLHVAAPRHGTSDRDHPLVYPGSDLDSSSSDASSRPSNAPSAYAAVSRALAGALAF
MFKRPVRLFRPVKISTWAGIQAIAEEQGRSVTPGFVRGLLRKEGWRFFPKHVLPPLAINA
TIGLTLFTAYTTSESLLTPRFDSPAAVFLLIPFVSGSLAGAAQSLISAPLDNARLLLLRR
QRFLRLAKADSRNPRLRRLHALRLATSAAGTPFVSWWGLLRDAVFQSARPAGLGGAAATT
ARERLEQGRRWARRGWSLFGLSLVKDSVGFGIFFVIFEVGREASRIAGLNWDGIDPHKAE
DAEEKQRRTPTGLVLQSLGILISGGIAGWVFSIIARPFERMRGAIWEGRSKWAEKDGRLK
VIEELALAGTDASTRSEQHAGATPQKRRRTSAGGASERKANDQLGPTGRKEFRVRIGRIR
TVSRSAAIEKRRKAREEERDRLLKLYELQLRQREGNQTAPPVPPPTALPARQPMPSAPSL
VRAACQRYGTLTFLFASRTTLQIVEARQSTPTSSAIPRPPPPPHRPVGPTRLSARGRKAV
EELRKQASGRGWRAGAKVLSYIPPYAVGFFFYALTSGDLKIEV