Protein Info for mRNA_4647 in Rhodosporidium toruloides IFO0880

Name: 13015
Annotation: K03032 PSMD1, RPN2 26S proteasome regulatory subunit N2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 transmembrane" amino acids 775 to 795 (21 residues), see Phobius details PF01851: PC_rep" amino acids 446 to 479 (34 residues), 26.2 bits, see alignment (E = 1.5e-09) amino acids 482 to 515 (34 residues), 26.4 bits, see alignment (E = 1.4e-09) amino acids 517 to 550 (34 residues), 26.8 bits, see alignment (E = 1e-09) amino acids 657 to 691 (35 residues), 34 bits, see alignment (E = 5.1e-12) PF13646: HEAT_2" amino acids 606 to 697 (92 residues), 53.1 bits, see alignment E=7e-18 PF18004: RPN2_C" amino acids 792 to 938 (147 residues), 147 bits, see alignment E=9.7e-47

Best Hits

Predicted SEED Role

"proteasome regulatory subunit Rpn2" in subsystem Proteasome eukaryotic

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1035 amino acids)

>mRNA_4647 K03032 PSMD1, RPN2 26S proteasome regulatory subunit N2 (Rhodosporidium toruloides IFO0880)
MVQSAQGLLSLLDEPEAALQAHALSNINQRIDQFWAEVADHVVKIEALSEDASFPSRQLA
SLVASKLYYHLGNLDEALAFALGAGKLFDVEPTGDVSPGQAEYVETVISKAIDSYTAARS
ASAPSAAFVDPARVPRDVDARLEAVVERMFERCERDGEFKQGLGVALSSHRLDVVQRVFN
KTKDASLLEWILDIVVRESVAVGGTSRSYKSEILQLLIKLFESLPSPDYFSITQCFVFLN
DPSLASSLLAKLLNLDSSEPPKDDAVLTAYQIAFDLAETASQEFLQVVRTSVAGSKPEAV
EGAEGAPAAEEAEPKEGAELHRERLATILSGEESIKLYLEFLYRNNKADLLILKDTLSAL
EPRNSIYHSAISLMNAFAHAGTTSDLFLRENLDFLGKASNWSKFTTTAALGVIHKGNLTQ
GKAILEPYLPRSDGGGATKSVYSEGGSLYALGLVNANHGKEDIVKYLMDTLKSSQDEVIQ
HGAALGLGVAAMGSGNEELYEELRNVLFTDSAIAGEAAGYAMGLVMLGTASEKAFDEMLQ
YAHETQHEKIIRGLAVGLAFLMYGKEEEADSLIDTLGKDADAILRYGGMYAVALAYAGTG
NNKAIRKLLHVAVSDVSDDVRRAAVTALGFILFRNPTQVPRIVQLLAESYNPHVRYGSAL
ALGISCAGTGLEEAIALLEPLTKDPVDFVRQGACVSLAMVLIEQNETSHPKVASTRELYK
KIVSDKHADPMAKFGAALSQGIIDAGGRNVTISMQNKSGSGNMPSIVGMALFAQFWYWFP
LTHCLSLAFTPTAIIGVDKDLKIPKFEFVSNAKPSLFAYQPATKPPTKETVEKVKTAVLS
TTAKVTARAKAKEAEQGKTEAMETDEKAEEKPAESTDDAEMKVDEAAGEDKKKDQTKRKA
PEPSSSRLENLSRVTPAQLQYISFPSDSRYVPVRPVNSGSAPAPSSLSSVTSSRSAPPVG
FGGGILLMRDTKPGEAAEFHELEVLKAIDTAGAGAAAPAEGAAGQAAAGGDDADLLTGPI
ADPPAPFEWTDWGSD