Protein Info for mRNA_4648 in Rhodosporidium toruloides IFO0880

Name: 13016
Annotation: HMMPfam-Mediator complex subunit Med5-PF08689

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 951 transmembrane" amino acids 781 to 791 (11 residues), see Phobius details PF08689: Med5" amino acids 424 to 672 (249 residues), 102.4 bits, see alignment E=9.7e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (951 amino acids)

>mRNA_4648 HMMPfam-Mediator complex subunit Med5-PF08689 (Rhodosporidium toruloides IFO0880)
MTLDSRSRSIDAVTRACYARGLPSSTLVSLVMDAAQAGELSKEDAEHDVTHSLLSLLADS
PFPPPLLAQYIQAALGNADLARPGYVASIVASRVPALALPAAEVAFSAINQTLASAPSQP
SYASDTPAETAQAVELALNSLLPLILSSPTSALETIRYLSYFLSHLPHRLTKEKVDAAQI
ESCAKRVGIAIEAVANVGSKDAPVLAKLRQDLEALRRKLTPRGRRRVPSSVDLDEFDEIE
GLRIPYGDVALLVSRMLSNPFLPTQQLQSSLLALIRYRTAQSTFRKSTPQKALVLLLVEV
LGGLIQTLQDAKRADVVLESLLFGKVPHVLKSLTTANGLDKLPEALAAALRLMQGRLAKA
TSDGRKDMDSSVPSVFSQFVAACCQSDLLLPDIGASLARDVDVSELQPVMIEDYQHRLAA
GSIDDLKQVLDEAVHSYAPQQTIASAVASLFAAKAQSADLAGLADLCDALAESKDAMSVI
FLHVEPRELLRPVRQVLDSFDTTQENSDDVNPIERYGSLVLFVQLVVSRFKLLDNLAYHL
DSSSSFVATWLPSASAVYAVSTMTDDERNAVSGWIGALFGEGISDDLMHATNPRTLLRVA
PTILKQSLKARQAGIVDMDSLRDALSYFLQELLRFTLPGVLKWLIAEIEQTPPSSQQNSM
LDLLQVLVFSDALPPAVLELVALDLARLLLSPAFASNVPSSVDIARLRKTIAPYRPLPPA
IQATVVDEHAAFGATSKPILSGAPSTEGEEVVATAIPPLYDSLRLSLRASKTPVSFFSCT
FLPPIFALLANTPTIATAAYSRLERYAAAVLAAPDSNGRPLIVALIWHLTPEELAEWDLR
MLPAGTADGLVAGETERMQVNLLGDAIAGAFVLVTGEGEADSSSSSTQTTSAAPDELARR
VQEIRRTRKSNRLGAQDDEEQTTALDAFLDRLLSWPAVFEASPRLAALAEN