Protein Info for mRNA_4650 in Rhodosporidium toruloides IFO0880

Name: 13018
Annotation: K02919 RP-L36, MRPL36, rpmJ large subunit ribosomal protein L36

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 TIGR01022: ribosomal protein bL36" amino acids 118 to 155 (38 residues), 61.5 bits, see alignment E=3e-21 PF00444: Ribosomal_L36" amino acids 118 to 155 (38 residues), 73.2 bits, see alignment E=7.5e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>mRNA_4650 K02919 RP-L36, MRPL36, rpmJ large subunit ribosomal protein L36 (Rhodosporidium toruloides IFO0880)
MHALTRSTPLVRALASPKHALARPLSTLLTPASHPARCTCPRCAPRIAPTSTIPTPSQPS
SSSRGVASVAGSNVASHPRGCGCARCAPRTIAGSSGIIAAPVRPTAAAANAVTGERGMKV
RSSVKKMCSGCKSVRRQGVLFILCDLNPKHKQRQG