Protein Info for mRNA_4659 in Rhodosporidium toruloides IFO0880

Name: 13027
Annotation: KOG1134 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 873 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 94 to 117 (24 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 400 to 438 (39 residues), see Phobius details amino acids 453 to 475 (23 residues), see Phobius details amino acids 494 to 517 (24 residues), see Phobius details amino acids 526 to 574 (49 residues), see Phobius details amino acids 591 to 635 (45 residues), see Phobius details amino acids 655 to 677 (23 residues), see Phobius details amino acids 688 to 707 (20 residues), see Phobius details PF13967: RSN1_TM" amino acids 20 to 169 (150 residues), 142.5 bits, see alignment E=2e-45 PF14703: PHM7_cyt" amino acids 192 to 388 (197 residues), 124.1 bits, see alignment E=1.5e-39 PF02714: RSN1_7TM" amino acids 401 to 674 (274 residues), 269.8 bits, see alignment E=5.1e-84 PF12621: PHM7_ext" amino acids 778 to 863 (86 residues), 58.8 bits, see alignment E=9.9e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (873 amino acids)

>mRNA_4659 KOG1134 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MASPGSLSNDQVTNKSTQTFITALVTGLIVLGAEVAAFIILKNRFRQIYSPRSYRVPPNK
RVDPLPHSFLGWIPYIIRTPANTILQKNGLDAYIFVRFLFLMMEIFAPFMILTWVILLPV
DAAGSRGTNTGITRFTFGNVGLSEQPRYAAHLILVWILTFWVFYLIRREYAKFIQLRQDF
LMSPEHTRLAQSKTVLVTGVPEELLNQSNMQRFCNVLPGGAKRIWFARDLKDLPDLYDRR
EKAVKKLEGAETKLLKLATKQIAKNKKKHLDAPASDPEASKSEVYRYVPQKKRPTHKLGP
LGLWGKKVDSIEWAREEIETTNRELETERELLGGNEGSTKYPARSAVFIQFHTQIAAHMF
AQCLAHHAPLRMSYRFLEVGQEDVIWGNLRIKPYEQRARYAASWAATIGLIILWSFPVAF
VGLISNVSALCISAPWLAWLCKLPVPVNGIIQGALPPIALAVLFMLLPIILRLFARFEGI
PLKTGIELSLMTRLFIFQVIHGFLIVTLASGLVKAIPAIAKNPSSAVTLLATQLPAASTF
FLTYFVTTSFAGAAGSLLQIVKLVVYYVKLILLGSTPRSVFGIKYNSSTVAWGTLWPSMT
LLTVIGLTYSVIAPLVCGFALVAFALFWFVYKYLFLLVIDTPPATETGGLFYPKALGHIF
VGLYIEQICMCGLFFLAQDANGKQSAIPEGAIMVVLIVTTVLYHIVLNSGYQPLVKFLPL
SVAPKIAATHGFPDGFPAHHNASREAGQTPQLAPTQSETTAREKDESTFPPPAGASFDGH
KRPLRTVETNDDTGTLPGDEHLDQNAFDHPAMYKDYDTVWIPQDPQGLYRDELEASQAHG
VDISAEGAYMNEKAKVDVHRAPPGEDWDDSQAI