Protein Info for mRNA_4663 in Rhodosporidium toruloides IFO0880

Name: 13031
Annotation: K18619 CORO7 coronin-7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1045 PF08953: DUF1899" amino acids 6 to 68 (63 residues), 24.5 bits, see alignment 3e-09 PF16300: WD40_4" amino acids 358 to 399 (42 residues), 48.7 bits, see alignment (E = 8.3e-17) amino acids 923 to 966 (44 residues), 58.4 bits, see alignment (E = 7.8e-20)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1045 amino acids)

>mRNA_4663 K18619 CORO7 coronin-7 (Rhodosporidium toruloides IFO0880)
MPPRFFSSPFKNALATPAKKESWWSEIPVANALPSDGCDGIKATAEYWLALGSSSGSLVV
LPYDHHGKFGMKAPTLQTGLRAVTAFEVDGFDRLLAVGGDNGQINVFELPPRSAFDPSNP
SAQSPTPLLSVAASSASKPVDCIAFHPLAESIFLSTSHTSLAVWDASSQSTSPVFQISMP
AQAWSARWSLDGKHVTTTGKDGKLRMWDVRSGSSDPVAEVAIHAGPKATRHIHISALSPT
AAPQILTTGFSRTRDREYSLFDIRSLASGATKTQRIDTGTGVITPLVDESRGIVYLAGKG
DMTLRWVEVGGPGGVTEGSAALPVPLLSAALAPPNTLELMKAEINRLVVLAGGGNDAIVP
IPVTVPRRQYLDFHSDLYPPVNARVPAQAGQDWLSHKDEDALYLEKRHLDPSTPWVIGDK
TRTSAASSAVSSAREARDSPAATSPSIPQPAVQVKTPEEPSAPSVSSVAPAAPVPAATVP
ATSAPTSTATSSASTATPSAPDSAAGAPAATFSNLSLNGKSSSPRPTFGSSAAKRSSSSV
QPAPQPTAPKTAPTASATPPIRSSATLGDSMKPDAWSRKFLAGKTSLKPDYFDVHDLSST
MGNDVQLLKASSLYFFYPLAGPGGRLAFHPLARKGRLPVHPSCVSIGGTITDFAVDPFDS
NRLFVAGDDSSIRVFWLPSNPDEEWKEGEVLTEATRTLTDARMDRISELHHHPAAKDILL
SISDDKGNPAARLWNVGTGEMLLRAELPKGGVSSTAWSSDGSLLALATKNKQVHVLDPRS
AASSLVSTAGHDSIRPVRVAWASDKHLLSTGFNRAASRELILYDFDGGKLTQVGKASLDI
SPAPLFPYCDIDTRIVLLYSRGDRSCLAYEVNFHPATPHEAFAKLPHFEHATLQSGFAFF
PKISNDIKSVEIVRALRLTPSTVEAVSFTVPRAKTEYFQDDIFVPTRNVIKPSMTAEEYL
SGANKPLEIVDLRPEGMKLLSGAPAPVKNISTRSKIKSDGLTDSQREQQHLDHLFQTAKD
EAASDEEEVEPVRSKNAIVQDDDEW