Protein Info for mRNA_4667 in Rhodosporidium toruloides IFO0880

Name: 13035
Annotation: HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 PF13302: Acetyltransf_3" amino acids 96 to 295 (200 residues), 51.3 bits, see alignment E=3e-17 PF00583: Acetyltransf_1" amino acids 240 to 295 (56 residues), 22.4 bits, see alignment 1.9e-08 PF13523: Acetyltransf_8" amino acids 247 to 302 (56 residues), 27.9 bits, see alignment 2.7e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>mRNA_4667 HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729 (Rhodosporidium toruloides IFO0880)
MIPSLSEHPSGPPCFACGARPGSKAAPSETVTLCKRCAFADVPVSFCDSKCYERAKERHE
KQNCVGQTNRRIFLDEPESWKHFCTPGCRVEIVSPRLRLRPVEIEDDKRIFAVKNERLVS
SQQLYGVIDDPSIVLPFFTAGYLANNIPALESEGSPVAGRTRYVWAIEPRLNKDGTRMVE
AKTVEGVKHDLDANGYIGNIAVQILVKPGGQRGSEFEPKPGKIFCYPSEEELANSPYEAV
LFYELHPNFWRQGLMTEAIKAVIPFVFTTLKLPRIIIDPVSSNEASLALAEKLGFPRIGE
VDRKSVSFFKHSRQIRYELTREQWLKTKKPSKSKAKKKRRKGAATEAAGEAEGQDEPEAE
RKETEVETKDGVNEGQEDVPKGESDAADIGVMGTQQTGEDAATTNGDEVVPVEARTCRW