Protein Info for mRNA_4671 in Rhodosporidium toruloides IFO0880

Name: 13039
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 transmembrane" amino acids 44 to 67 (24 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 135 to 157 (23 residues), see Phobius details amino acids 177 to 199 (23 residues), see Phobius details amino acids 255 to 279 (25 residues), see Phobius details amino acids 417 to 442 (26 residues), see Phobius details amino acids 462 to 483 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>mRNA_4671 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSAARRYTLPASPAGTNPYEYWIAVTESVQRSRPGDKIGLDVRLSILCALLAFVFLAAVA
NLCITVIDSRRRGKSLFLWRLVARTRGRYIVGNRQLLEPILTVITTPLLIAHVAVEWTGT
LGSGDVESVGALRVTPWTLLFLQLWIVSWASLQGYIITNGEASRGLRWLSPRLANSIFLG
VGLVMLAGLIVCDILAARAAVDLDAANDRLINQLRDLAPNWSGTIAPDVMTTLQAGWSKV
MGYASDVFTYARALMAIYAVSPFFTALVNAACIALLIVVRQQIKENYRTFGVDTTHSALV
RLPELRTTPATPGRQEELVVDFASPIGTVSDATTTQPTVSLNVIPATPRLGTESLPSTSK
GGATSSAGHSIVDLSRSSTSRRSKPSRSAVRKLAGEEAGGIKAVRARNLQLLHRAELDLL
ITTLSSIAMAVSFSGLSLWIVIELPNFHKRRTVATEIALTLGSWLYGLIVGLTLSAHFYI
AYVNLARKQADVNYSLPTSQPVTPLRDLTEYFGATWLDGAMSQPGDGSIGNPAWLSPADA
QVRPEEDGRETLVEAEGSTENETKSETRSSA