Protein Info for mRNA_4681 in Rhodosporidium toruloides IFO0880

Name: 13049
Annotation: K01539 ATP1A sodium/potassium-transporting ATPase subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1089 transmembrane" amino acids 160 to 182 (23 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details amino acids 356 to 378 (23 residues), see Phobius details amino acids 397 to 419 (23 residues), see Phobius details amino acids 849 to 859 (11 residues), see Phobius details amino acids 876 to 898 (23 residues), see Phobius details amino acids 926 to 949 (24 residues), see Phobius details amino acids 980 to 998 (19 residues), see Phobius details amino acids 1019 to 1037 (19 residues), see Phobius details amino acids 1052 to 1069 (18 residues), see Phobius details PF00690: Cation_ATPase_N" amino acids 112 to 177 (66 residues), 44.3 bits, see alignment 3.6e-15 TIGR01494: HAD ATPase, P-type, family IC" amino acids 200 to 469 (270 residues), 123.5 bits, see alignment E=4.1e-40 amino acids 764 to 853 (90 residues), 85.3 bits, see alignment E=1.6e-28 PF00122: E1-E2_ATPase" amino acids 228 to 424 (197 residues), 148.3 bits, see alignment E=5.7e-47 PF00702: Hydrolase" amino acids 442 to 706 (265 residues), 35.2 bits, see alignment E=5e-12 amino acids 754 to 804 (51 residues), 30.7 bits, see alignment 1.2e-10 PF13246: Cation_ATPase" amino acids 490 to 587 (98 residues), 57.4 bits, see alignment E=3.7e-19 PF08282: Hydrolase_3" amino acids 781 to 823 (43 residues), 21.4 bits, see alignment (E = 5.8e-08) PF00689: Cation_ATPase_C" amino acids 873 to 1075 (203 residues), 131 bits, see alignment E=1.3e-41

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1089 amino acids)

>mRNA_4681 K01539 ATP1A sodium/potassium-transporting ATPase subunit alpha (Rhodosporidium toruloides IFO0880)
MDAPKVSIVDNKEFRLERTKTLPSRALGLEVPRTRTHNSHIPLGYRTLSIHVYDSQRFDG
PNPARRHHARTGPSLASRLAFWRRKSAEEEQQAPNALQAGADADFFSRLDHHTVSPAEVC
QRFNVAPELGLDSSAATKRLQRNGKNVLAKRKSDWWKKALRYTFGDFCSILWIGVIIFFI
SWRPLGNPPAPYNLALAIVVLIVIFSQAIFSALQDWSAQKVMDSIMSLLPENAVVLRDGQ
PREIPSSDLVVGDVVLLSTGQKVPADMRIIKASNDLKFDRAVLTGESEEVAGTVTTDEQN
FLEARNIALLGTHVCNGTATAVVVLTGASTVMGRINMLTRSGADERTTLQKEITRFVKII
CGLTVTLVLIMLITWLAWLRVDHFDFLNTTGILTNLMSLVVAFIPEGMPIAVAMTLSLIA
RRMRDAKILPKSLSTVETLGCVNVICSDKTGTLTENKMSVVSLAYVDQQLDLEKSHLESR
SFTHFRKSMIMCNDAFFDQATLDAPIAERKVQGNATDGALLRFAAALNGGLEAVSSNFDR
AFDLPFNSKNKFALTYVIPAGEKVDLAQDGEILVKGAPDILLDRCDSYVSGLEDGEVKPL
DADARARLVAQQEALSRQGQRVIILTRRSFVPANAPGTTEFEAEVLEAAASSLTVIGLVG
IIDPPRVDIPHTVSEARRCGIRFTMVTGDFSLTACAIAQQIGILRRSDPDRIADFTSKDR
YAQLEKVRDDRLAFIDGALVVEGKEIAALSQQEWDVVCKYEEIVFARTTPEQKLRIVTEF
RARGNVVAVSGDGVNDAPALKAANVGIAMASGSEVAMEAADLVLMGDFSNIIEGVRLGRL
VFQNLQKVISYLLPAGSYSEDWPVIFNVFFGCPLPLSSFLMIIICCFTDLFCCLMLVFEK
PEFDLLSLPPRDPSKSRLVNLRVYGHSYLFIGTLETLCAHSMFFFYIWTAAGIPVNRMFF
AFEKYSDGFYGHTQAELNHFLNTGQCVYFVTLVILQFANLNSVRNKRMSIFQNGPQHNWK
LICGPVISLAIAIFVTEVKGIQNLFGTASVPIKHWLLPIPLAIGVLAMDEVRKVLVRAWP
KGLVAKLSW