Protein Info for mRNA_4690 in Rhodosporidium toruloides IFO0880

Name: 13058
Annotation: HMMPfam-Heterokaryon incompatibility protein Het-C-PF07217

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF07217: Het-C" amino acids 14 to 569 (556 residues), 695.4 bits, see alignment E=3e-213

Best Hits

KEGG orthology group: None (inferred from 52% identity to scm:SCHCODRAFT_70665)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (796 amino acids)

>mRNA_4690 HMMPfam-Heterokaryon incompatibility protein Het-C-PF07217 (Rhodosporidium toruloides IFO0880)
MPHSHARTLALALTLVCVVCFLPSAHAFGAGNIPGYSFLEGKAFRHGDIEDALAELIKKS
GGILGRGSKFGGLDIKRVYFGNWLRDYSQAMDIAGLSKLSKQTILNLVMALGFLAHGYAT
GEFEVTDERLGVYLPVEHIDNPKGYADDQPGKDARLVDPRLRPPVEEIELAIDPQTGMAN
YIANENGHWDTSARLVRERIVQCVEWGRRARNGGGERELYEAYRLLGTLLHTLEDFSAHS
NWCELSLLRLGYTQVFCHVGDAVRIHSPSGTCPPLVTGSFGGADFLHSLLGEATDHISEA
SVSDLSKAMEGARSASNGERGFGGSSSSTSDTLRKMLFDLPGSSGTELSREMQGVEDIRA
RANAGQLGELSPQELHATLWKVLTFRDNVVKGIERTIEKVPGLSTLSEKLSNSVNAFVFE
TIEPMLKPIMGQATQVLGQGSAQVINNSDQYAVFDNPHASNPTHSFLSKDHFALILNEPA
GQIAIIVLTHTVKQIVKAWEDTSVDPRMVASKALEAFHHPYFYNDNSDVQREMGAYMKKW
IDSQSHDDKRIILERLTKDAVRQHKNKRKGHESDQEGHGAHGQYNSVLMPQGVGAFAQQY
IPGANSAMNTFNQASNKFSQVQHAFGGPGGGGGGRREFEGGFQEPAQGYMPPMGAPPQAV
HGGAPSFNEFNQPHTSSGYPHSPAPFDQQQGYPGQGGHHGGGHHGHHQHPQGPPGGYESG
YGGGNGGYGGPPGPPPGSYGGAYDQGPPPMMQQDYGGPGGYQQPPPPQQGFYGQGPPPPH
GGYNPGYGGQGGGGYY