Protein Info for mRNA_4699 in Rhodosporidium toruloides IFO0880

Name: 13067
Annotation: K09140 TSR3 pre-rRNA-processing protein TSR3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 PF04068: RLI" amino acids 71 to 105 (35 residues), 54.6 bits, see alignment 7.9e-19 PF04034: Ribo_biogen_C" amino acids 109 to 234 (126 residues), 178.5 bits, see alignment E=4.3e-57

Best Hits

KEGG orthology group: K09140, pre-rRNA-processing protein TSR3 (inferred from 54% identity to cci:CC1G_08596)

Predicted SEED Role

"Ribosome biogenesis protein TSR3"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>mRNA_4699 K09140 TSR3 pre-rRNA-processing protein TSR3 (Rhodosporidium toruloides IFO0880)
MAPRGRGRGRGTSSGAGKGGRNNTPRVQRDRSHYGGSGFSEIPASAVDQPLKGEASESDG
EGGDELLASKVPVAMWDFDHCDPRKCSGKKLARLDLMQELRVGQRFQGVVMSPKGTQVVC
PADKDIVAAAGVAVVECSWARLEEIPFNKIKSPHERLLPYLVAANPVNYGKPYKLTCVEA
IAAALYITGFDAQAEVLLSKFSWGHSFWEVNGPIIERYRTCTTPESVIEMQEVMIREMER
EQDERKRAKEEIEEAGDLLIENPNHAGGAWRPHHSDEEEESEEEEEEEEDDDEYEIDKLG
NRIKKL