Protein Info for mRNA_4711 in Rhodosporidium toruloides IFO0880

Name: 13079
Annotation: KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1278 PF00176: SNF2_N" amino acids 381 to 876 (496 residues), 146.9 bits, see alignment E=6.8e-47 PF00271: Helicase_C" amino acids 1078 to 1193 (116 residues), 23.9 bits, see alignment E=4.5e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1278 amino acids)

>mRNA_4711 KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily (Rhodosporidium toruloides IFO0880)
MSLTSVEEMKPSPPQLKKEDEERSVKREEVVDDDAKEFEDWNESRGRSGTAEKGKAAAVV
LDEEEVKSQGVKPEAAAIPANRLLDDIPFLTPVPTPVGESSSASLPFASTSAAIFPFGRP
VSPSRAPLAPTRLPAPTSPSRHAQRIPLPLDHLISAGTILLKDHQLVSDDLDVAQDGWLA
FMRDSVQPASQAAVPADEDPFTQPPSARAKSPSKARAGQKRRASTSAGQPPRKKAKVGGN
AVLDSLASMSAALACSCTMHVSGTDVVLRVYLVPQDLPELREPAYSRGKTKRPAGATVLS
VLQAVRISEEEWMGVPQDGDVPTLMEEEDRRSLLEVYRDIESPAHDESFLDQVDAAEDVK
SRLAWSLTENPPGITTTLFPYQRATLAKMLTRELAPQDIPHPAFIARSTSLSGRQRDFWV
SIDGSVRLKPTVIREPQGGILAEDMGVGKTLIVLSLVMSTLSELPSVDGFSSYLDNSQPS
PSPVLLTALSERFPFKAEIEEQKKLKPRLVQLLPGVELDVREQLDYEAALAAQEAEDARI
PDLPFPSLRSLAAHIVKTSTHPNRYPHFDEVEEQQPLPESLFSLLQDSPPYYRLYPSLAQ
ENSREGRRGNLRPQQIFVAATTLVVVPTDLVRQWHEQIKEHVAPKALRYIVLRTAKDKFP
TAAEMAQQDLILMSVKRFSDAADAEETALRHVHWKRLVIDEGHVLANGTRMRKLAEELRC
ESRWAVSGTPSTNLRVVQEEEEVALFTSPSAAGGDRTDIDRLGQLFARFIQHDAFPKHDS
LRKLCQTHVYGGGERAARLAAVFDRSVIRHHPKYIKDSFELPKLSKRTVHIPLEEAERRV
YNVLVAFFASNAITSQRVDVDYLFHPSKRAHLEQLMDNLSTSTTFFGSYEFVAMVHDARN
FAKKMLDGPKSDAWTEEERVMERKVLEVFQEALDDPETILTAGTPSVAFEVTGLDDELVA
TFRGLKAVKNPRGRTLVPLPELVRMRVDLDELRRVDVKAWEDDEELVEELITFEEKRKRL
DAAPKPKKKEKDQPPANPEDEEPPLFKKRSKNDQTPLAPFPDDSIFRNIGLVRTTSSKIN
YIIREMREHPDDKFIIFSSSNVDIIFANLSEALDILGIRHLVFAGSHARSGDRGEKAQRF
NSTTARECQAILVDAKLGGRGFGLTAACRIIAVEPIWKPDLEVQAEKRAHRLGQTKPVDM
KILVVANSFEDAMLSRRAQVAPADFGKKVKAPQQDDQLRSLLQRAQYLEPDEKARDGGIV
SAALDPPIIFGSSSFQSD