Protein Info for mRNA_4721 in Rhodosporidium toruloides IFO0880

Name: 13089
Annotation: K10643 CNOT4, NOT4, MOT2 CCR4-NOT transcription complex subunit 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1042 PF13920: zf-C3HC4_3" amino acids 193 to 244 (52 residues), 27.4 bits, see alignment 2.5e-10 PF14570: zf-RING_4" amino acids 196 to 243 (48 residues), 76.1 bits, see alignment 1.4e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1042 amino acids)

>mRNA_4721 K10643 CNOT4, NOT4, MOT2 CCR4-NOT transcription complex subunit 4 (Rhodosporidium toruloides IFO0880)
MRHAWSQPAHARAHPPASSSASAWSASPVPSAHLAHAAPPASAYPPLGATHADIAAASTH
SNGIAQGGAGTGAGVANASTALERVLAMLDGFEVSRRCSGIYSERVGRTYADRTTRCGSP
SRAKTGQGGALRADLVRSAEGGVEGQAAGSRIAEELACGLARRRRVALIDSVEIVPLVEA
VVDLPPASPAQDDMDCPLCLEEMDLSDLNFKPCPCGYQICRFCYHHIKENLNNRCPACRT
PYDDATVEFKAIKPEEMKRLQAAKKLRDKRRKDAELAMQNKANVRVRQRTQVHITGMTSK
EANEDTLAQLKDADHFGRYGTVLKLFMSKRSPSAPQQGPSHPHFQPVNVYVNYRTPSEAS
HCIAATDGTFSSDGNKLRAGWGMTRYCPTYLKGARCSNDNCTFAHEPGEEVEGPAPSTKD
EIFTYDSEVVPKPRSATPTIQAKKQPEASLPATASWASKNAPQQPTTPIILNPHLPPLSA
TLPKPPPPRTISVPKPQNHPLPARPSSRSKQAKDAAAATAASSAPASSSSSDAAAKAKTS
DADESAEQQPAEPVASTSRSPSPSPTPSAEVVSPPPPASNDPFAAFTLSNGFSSSFDVPT
VPFPDLEFGDGPFSFSLNLDVKGKGRAVTTSSGEESTPLRDFANLESFGRPSETSEANGP
FSPSALSSAASSSYMGSFDPFAENTFSLGSNDLRSGSPTPPSTAEDELSRRSSRFGFARR
SSSSQQIKPMELLSAAARSAFGGNSSSGGREASPNGLTSPASTFAPPPGFGLPLRSTAFA
SLPPAGDNRDWQTGTGAAAPAFPPGMLRNLASPSASATSSPQLSPRTRSNLPPSQQQHPY
GLPPPGLGGPLGGAANSALPPVGGAANSALPPPPGLMQGQGRSSATAIPAASFPLPPPAP
RSGSGPSSTVAKEDLLALIAAAQASAPKQQQQGHQQGQDANPHPFFSDPAILNARLASTA
DSALPPPPGQQQQQQHAFSPFGAGGQGSPFPPGMRLPFHQHGMPQPQQQQQPGGQQGGVA
QGPPPGLAGLYRPMPAGQAGKV