Protein Info for mRNA_4731 in Rhodosporidium toruloides IFO0880

Name: 13099
Annotation: K08770 UBC ubiquitin C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 PF11976: Rad60-SLD" amino acids 86 to 156 (71 residues), 55.7 bits, see alignment E=1.4e-18 amino acids 162 to 232 (71 residues), 55.7 bits, see alignment E=1.4e-18 amino acids 238 to 308 (71 residues), 55.7 bits, see alignment E=1.4e-18 PF00240: ubiquitin" amino acids 88 to 159 (72 residues), 114.5 bits, see alignment E=6.1e-37 amino acids 164 to 235 (72 residues), 114.5 bits, see alignment E=6.1e-37 amino acids 240 to 311 (72 residues), 114.5 bits, see alignment E=6.1e-37 PF14560: Ubiquitin_2" amino acids 88 to 154 (67 residues), 21.2 bits, see alignment E=1.3e-07 amino acids 173 to 230 (58 residues), 20.5 bits, see alignment E=2.1e-07 amino acids 249 to 306 (58 residues), 20.5 bits, see alignment E=2.1e-07 PF13881: Rad60-SLD_2" amino acids 95 to 156 (62 residues), 12.6 bits, see alignment E=4.8e-05 amino acids 171 to 232 (62 residues), 12.5 bits, see alignment E=5.3e-05 amino acids 247 to 308 (62 residues), 12.5 bits, see alignment E=5.5e-05

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>mRNA_4731 K08770 UBC ubiquitin C (Rhodosporidium toruloides IFO0880)
MRQNRSAELTERFVQRVACLRNLAVRSGENATERSAAEQSRRRARRISRRAQSAQSESKL
CSLALFLSCSRPLHTTTRTLSSSITMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG
IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES
SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQI
FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
ESTLHLVLRLRGGNA