Protein Info for mRNA_4752 in Rhodosporidium toruloides IFO0880

Name: 13120
Annotation: KOG1263 Multicopper oxidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1043 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details PF07732: Cu-oxidase_3" amino acids 476 to 567 (92 residues), 105.2 bits, see alignment E=3.5e-34 PF00394: Cu-oxidase" amino acids 582 to 724 (143 residues), 76.6 bits, see alignment E=3.7e-25 PF07731: Cu-oxidase_2" amino acids 855 to 959 (105 residues), 94.5 bits, see alignment E=7.2e-31

Best Hits

Predicted SEED Role

"Multicopper oxidase" in subsystem Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1043 amino acids)

>mRNA_4752 KOG1263 Multicopper oxidases (Rhodosporidium toruloides IFO0880)
MPVQLLATARTALSLLLDFISLPRSSLILAVWSLEGFATMRGAAEGAYFVVEANLRSPLR
ACTPQVASSYRLLSPSHPYPRAYSALSTRLRDVCVAQQDLCPSRSRSSAALRSAPLLALL
HDEFDRRYETCKRYLLPLTRRTNAPPPRSASSSNLAALLAPPTDLALLVVDRRSQDMLSK
AAVKALGAAVVSLIVTIALSASQVSARDLNKCPLGYASCSGIKDVSPVCCPEGCSCARAE
EGYAYCLSQNGGTSRESPCCVADTYCAQVQPSWLICDRSPLRSEGPPRRPTSSGAAQPIA
SSRNRVAKFPLTGTEINFPSAFGSAGSTSTNNDDSGDWFDDDDGSTASNADGASGGRNAQ
RPASAGSTGPHGADNAFNAPSSPGSTSPSMSTDYGSRRPSGPPMISKLDELRLWPDWDVH
APPQTREYWWTIAKHPGAPDGYLRPMLLVNGQFPGPLIEANNGAPSLPLLPFRKLTLHSC
VGDLIVVHVQNSLDQPITIHWHGLSQNGTNWEDGPSGVTQCPIGSGQSYTYQFPITGELE
YGTFWWHAHRRALYSDGITGPLIIHSPLDPLVRGRDFDIDQIIFINDWYHDTTDTIVNSL
LSSQGYNSSFVAPSPQSGLVNGAAIYNCRFAEPGSTCEQRTQRDMPELRFPPDARVRLRF
INAGAHPVNWVLVDEHELYIIEADNTPTLPVPVHRIPVNVAQRYSGVLLTSGHRIGDSFY
LRAQINTACFGAGFPDLDPQTRIVIRIADEGHRLARTLPRSRDWNDPTTGNCTDLDERLL
EPIVVQHAPPRADQISFFNSSRIGPLTTTDEAGLSDGISFLEWTLNNITYENFAYNPLLH
QIVRGEDPNTGRIALITAWNVETVDIVIQNLNGPEHPFHLHGKPFWIMARGQGSVGPETI
ASLDLNTYNPLRRDTLGLPSGEWVLIRLVADVPGVHAFHCHIVFHQAQGLFGALIIQPDV
IRNFKIPEANYQLCAQGNPNMIDPGRRRRLRKRLFDLPHLDLLHRHSKTSTTTSPPPTHT
VVHAQQHDEKTASHSTMTRSVIG