Protein Info for mRNA_4759 in Rhodosporidium toruloides IFO0880

Name: 13127
Annotation: HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00734: CBM_1" amino acids 55 to 72 (18 residues), 28.3 bits, see alignment (E = 7.1e-11) amino acids 133 to 159 (27 residues), 30.4 bits, see alignment 1.5e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>mRNA_4759 HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180 (Rhodosporidium toruloides IFO0880)
MHLSILLSLVTTALPLALVDAAPAPAADVASTDSYHDDGHCGGGGGGYGGKVDNWGRCGG
KGYKGPTECEDPLPPLAQARTARSASKVTARRTRRRRPAARPRAPQRAGYPHSTSTTASH
GGYPTGYPSTAPAWGQCGGKGWHGPTTCGAGYVGKYHNDGWSIVA