Protein Info for mRNA_4760 in Rhodosporidium toruloides IFO0880

Name: 13128
Annotation: K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 645 transmembrane" amino acids 203 to 224 (22 residues), see Phobius details amino acids 240 to 259 (20 residues), see Phobius details amino acids 270 to 288 (19 residues), see Phobius details amino acids 299 to 317 (19 residues), see Phobius details amino acids 329 to 347 (19 residues), see Phobius details amino acids 352 to 378 (27 residues), see Phobius details amino acids 428 to 450 (23 residues), see Phobius details amino acids 470 to 489 (20 residues), see Phobius details amino acids 510 to 530 (21 residues), see Phobius details amino acids 536 to 558 (23 residues), see Phobius details amino acids 569 to 589 (21 residues), see Phobius details amino acids 595 to 618 (24 residues), see Phobius details PF07690: MFS_1" amino acids 210 to 581 (372 residues), 108.5 bits, see alignment E=1.9e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (645 amino acids)

>mRNA_4760 K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein (Rhodosporidium toruloides IFO0880)
MVVTGCNGLRYTQRERSCAPEQLERAPTRSLAMPSSPHRNSLAPPPSNQTSTSAAPSNTA
STPRIRYQSGHVLDHIDSYILRGEDMTHSPGESRLPSPVPSIRAGADGERRGKREEEEEE
RTLTSGSANGGAGRDGLDDAAKGLRSRKVSGVDEGEKRRSNKEDSGGEQLTDPATRQWKN
DVVTFDSKDDPANPKNWTFRRRYFLVALLGMTTMCSTFASSIFSTATPAVAAEFGVSTEV
ATLGTSLFLCGFILGPIIFGPLSEVYGRKTIFIGTFAFICFSAGTATAKDLQTIMLTRFW
AGVGASAAPSVVGGALADMFDARERATAVVFYSLAIVAGPTVSPVIGSAVTYLVVILSSF
VGLISVVVVPETFASVILTRKAKKLRFETKRWALHSKHEENDFSLKHFAEKTLTRPILML
VKEPTVTAICTYNFFTCALFGASGTLYLLFSSVPIIFEEGHGWTPVQSSLTFLAVLVGTL
IAAFINYLYSRFVFARHIDKHGSAPPEMRLGPMMVGGIVFPVGFFLLGWAPVAGKIVGLA
FVGVAFLLIFQAGVNYLIDAYLQYSASAIAANTFLRSIFASALPLIAMPLFHNLGVGFAC
TLLGCIAAVLGVVPFAFYRSSSSIRSSLRYYGPQLRGMSSFAKAG