Protein Info for mRNA_4768 in Rhodosporidium toruloides IFO0880

Name: 13136
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 751 transmembrane" amino acids 196 to 218 (23 residues), see Phobius details amino acids 238 to 257 (20 residues), see Phobius details amino acids 279 to 299 (21 residues), see Phobius details amino acids 310 to 329 (20 residues), see Phobius details amino acids 339 to 361 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (751 amino acids)

>mRNA_4768 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSASSQPPASAAQDRPAPEASSSSHAPLYANPPTVGQAKPRLDPASSTHDYRRGTCAVLP
SVRQPASSHPLECNSPPTEQLAEELNRDEVAIEMGYAGVGGGNGEGAGLGDDRGDGREAA
REGFAAEGDGDGSEGSDDNSARSAEQGQWDRFRRSGMRVAPAVQIAALLDTPRARNLRRI
FRNGELLIKVGYSSSAAYWTAFIPVCVVALFWVAWRFWMHYRKAHSKTADQIGCVEAVTG
AAGGTFPTLIPLIVIWRYKGRVSEAVEGYLGRGATPAESALFLVSIAVLVILHIMSIAWP
ARTRNPIDGLWINGVAPVGIGCLVVLLAQLPSSNIGGDLAFFLFLQCLLSAVSTFLASPS
APVVTPFRSKTSPLPLKTHRIFGEVSRRRPASPFRRHALSGRRNRRAQQTFARLVTETDN
VETLTGESELLQENAVDEAARSFCPVSVLPYPSTAAPGKRPSPGRQPSTFSSPTSVGESS
MAQLWQQKGWRSSTKPRYNHGLVPPHMAQQLAPFAFPDHPFHDPASPPRYSLDQGLGQLY
TVQDDPAEGRTVRAESKELQQELADRVYELRMGYTVLVHAQQRFYDWLRRRHLPAQYVYQ
GLEEYAEGSAGGPLPYWPPAARHKCSEGANVRADWLLGRFVVERSSTGHLGPAQLAFLND
DDPTYFNDCALPAIVVVPPRNPSARIVGLSRAQKPAPPPRYSSDHDDDDPHGTDSSPDSS
FSKGHSSDSGHGLLSDLIDLDNEPCPPSPRS