Protein Info for mRNA_4770 in Rhodosporidium toruloides IFO0880
Name: 13138
Annotation: KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1345 amino acids)
>mRNA_4770 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference (Rhodosporidium toruloides IFO0880) MAAPRTPSKTRHVDVLAPSAAPPRPIKALSPLRTSSTTSLLSPQAAKPVNIFAPVSKGPA TGVGGATDDWRLENGRIVLVNAPSHLRMLAPCSWLHQYEHARYLHAGLSQSAVQWPCYPY KIVDGVERNHLDEMSSYLAAALLPRRIKPYDRGLLVEVPQCESKKELEAAFKRGTILFSG NLSIARDGKARPERLSVRLAPPSAGMGSALYRRFGSDRFFRLVLEDDLYRPFCWKDGTAV YWAESGEGLETISLVDFAQRYLDVKLNGSMSVAKYAARFELGLTTTTPTVIFRRDQVFRT PDINSDTLKLSFSAMTAICDEFRSKMPLDAQRLLPAPYIPSCIRGSVKPYAGAPSVEMVW QLDYSTIDPPSSNAFIQLRPFEQGRTRPILKFQLVDKDGSFYSCIGPRSLKPVWVEGPPV KKEEVVMTDGCSLISMGAMRVVAKKLAASGREAKVSAAAMPTVAQGRTGPGKGVWTLAPR TPWNRWTAQSDHDIWIEVRDSQWKFKDRRTESFTFELHSLPSGKTGSKLGKRMFEVFAHC GVPTTVFREMLKKQIDEIRRVLWDYPDLPTLLYHVQRQCNILEDRTSKARIASNPGSLKR TNSNGPGGFDEDLDQVEEQQEQDVTSFVQDARLDPTSGAPNTVAEVVVEMLQSGFDPRQN PHLADKLKRVEESLIRKQISFRIADDYSYTAFVVADHLGILEEGQFFFQLSERPLDANGL QIGAVLGPALLTRSPAIQPCDIQKAATGVLCEAYAAYCDVIVVSTKGERLLCSILSGGDY DGDKLVVMTNPELVAAFDSSKADPSFADPPFADSDWFEVDRRRVVDHVKPMIDLHNDAAL AGVFMEGLHAGTQYGVLSVYHTTLAYTLGLDHPLTSEAGHLFCKALDGRKQGFSFSPEKW KELKTKFFEPYKDKPRWTLCEDGKTAPNNVKYAKRPAEQGKHVMDELIREGEKAVDAAKM SWSNRFDDLVYTVEGDLADPWTTAWESALNARHASPALFDDLCVILEHVKSIYAQYRQLF SEWRRDRELRDRTECAAGAPGSPIKSPSKSKEWSGSSRNQKEALLQLSKRFWSLVVDNAF ESAHLQGPAGAANVRVLMASCAYIEPLVPTFVPQANGVTLLRRLQDASPARPPAIAVTEA LAVSTSSSEVTVLHAKEVTFSKAAASDDVEMEDSYGDDGLAWSQIPDDLTQVAVTSLGST SSSQTATVVVSSSHPSNTTPTAPPSPAAAPRSPAKAPPAYSSYRARPFREVAGRSEIRFC YDMAHRDVLALRADSLTRALHGDNPGATGIQAPKIAPHILDVLQVAKRCATLAQARTKVR PRTLLEAKEWPPVSLGSPAKKARRN